View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_6 (Length: 458)
Name: NF18138_high_6
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 53 - 449
Target Start/End: Complemental strand, 20753815 - 20753413
Alignment:
| Q |
53 |
aaagaaaaaccaaattccaaaatggatatttccatagttatgataaggaattcctttcta------tctttcttcatctttataagcttaggattcttag |
146 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||| | |||||||||||||||| |
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| T |
20753815 |
aaagaaaaaacaaattccaaaatggatatttccatagttatgataaggaattcatttctacttatctcttgctttgtcttcttcagcttaggattcttag |
20753716 |
T |
|
| Q |
147 |
aagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattcttcc |
246 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20753715 |
aagctcaaaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaataatcacttgactctttctcttgtaaaggcaattcttcc |
20753616 |
T |
|
| Q |
247 |
ttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaatttcactct |
346 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20753615 |
ttactatggcattgattttccaactaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaagttcactct |
20753516 |
T |
|
| Q |
347 |
cttgggttttcaaacaaatgtttgttgttagtattattggaagatgacaaattaacactcnnnnnnngaacattgcacaaccatatacatattcgtcctt |
446 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
20753515 |
cttgggttttcacacatttgtttgttgttagtattattggaagatgacatattaacactctttttttgaacattgcacaaccatatacatattggtcctt |
20753416 |
T |
|
| Q |
447 |
tgc |
449 |
Q |
| |
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||| |
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| T |
20753415 |
tgc |
20753413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 53 - 337
Target Start/End: Complemental strand, 20759500 - 20759213
Alignment:
| Q |
53 |
aaagaaaaaccaaattccaaaatggatatttccatagttatgataaggaattcctttctat------ctttcttcatctttataagcttaggattcttag |
146 |
Q |
| |
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||||||||| |||||| ||||||||| |||||||||||||| |||||||| ||||||| ||| ||| ||||| | |||||||| |||||| |
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| T |
20759500 |
aaagaaaaaataaattctaaaatggat---tccatagttatgatgaggaattcatttctatttatctcttgctttatcttcttcagcttagggttcttaa |
20759404 |
T |
|
| Q |
147 |
aagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattcttcc |
246 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||| |||| |||||| |
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| T |
20759403 |
aagctcaaaagactccagctatttatgtgtttggagactcacttgttgatgttggcaataacaattacttgactctttcccttgtaaaagcaactcttcc |
20759304 |
T |
|
| Q |
247 |
ttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaa |
337 |
Q |
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| T |
20759303 |
tcactatggcattgattttccaactaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaa |
20759213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 113 - 327
Target Start/End: Complemental strand, 20802312 - 20802101
Alignment:
| Q |
113 |
tctttcttcatctttataagcttaggattcttagaagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatc |
212 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| ||| ||| ||| ||||||||||||| || ||||||||||||||||| ||||| ||| |
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| T |
20802312 |
tctttcttcatctt---aagtttaggattcttagaagctcaaaaggttcctgctgtttatgtgtttggtgactcacttgttgatgttggaaacaataatt |
20802216 |
T |
|
| Q |
213 |
acttgactctttctcttgtaaaggcaattcttccttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgc |
312 |
Q |
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|||||| | | | ||| ||| || ||| ||||||||||||| ||||||||||||| ||||||||| ||||||| ||| |||||||||| |||||||| |
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| T |
20802215 |
acttgaatgatacctttgcaaaagctatttttccttactatggtattgattttccaactaagaaacctgctgggagattttgcaatggcaagaatgctgc |
20802116 |
T |
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| Q |
313 |
tgatttgattggtaa |
327 |
Q |
| |
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||||||||||||||| |
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| T |
20802115 |
tgatttgattggtaa |
20802101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 40638575 - 40638741
Alignment:
| Q |
160 |
tccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattcttccttactatggcatt |
259 |
Q |
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||||||| ||||||| |||||||| |||||||| |||||||| ||||| ||| |||||||||| ||| ||| ||||||| || || | ||||||| ||| |
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| T |
40638575 |
tccagctgtttatgtttttggagactcacttgtagatgttggaaacaataattacttgactctatctattgccaaggcaaatcatcgtcactatggtatt |
40638674 |
T |
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| Q |
260 |
gattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggta |
326 |
Q |
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||||||| | | | |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
40638675 |
gattttcttaatcacaaaccaactgggagatttagcaatggcaaaaatgctgctgattttattggta |
40638741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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