View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_12 (Length: 318)
Name: NF18138_low_12
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 53939985 - 53940108
Alignment:
| Q |
1 |
acaaccattcagggtcacttcacaacgatccaagtgagctctaataccccaatacaaccatggtaactaaaattataattttgtaaagggaaaaaattat |
100 |
Q |
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| T |
53939985 |
acaaccattcagggtcacttcacaacgatccaagtgagctctaataccccaatacaaccatggtaactaaaattataattttgtaaagagaaaaaattat |
53940084 |
T |
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| Q |
101 |
atttatacaaccactttatgataa |
124 |
Q |
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| T |
53940085 |
atttatacaaccactttatgataa |
53940108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 53940184 - 53940295
Alignment:
| Q |
200 |
tgtcatcaaggttgtctcaattggttgttaaaatatcactaatcttttgttaattatctttaaacaagttgacgagagtatctaaagccaaattctcaca |
299 |
Q |
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| T |
53940184 |
tgtcatcaaggttgtctcaattagttgttaaaatatcactaatcttttgtaaattatctttaaacaagttgacgagagtatctaaagccaaattctcaca |
53940283 |
T |
|
| Q |
300 |
ttcattcttctc |
311 |
Q |
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|||||||||||| |
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| T |
53940284 |
ttcattcttctc |
53940295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 39241224 - 39241184
Alignment:
| Q |
210 |
gttgtctcaattggttgttaaaatatcactaatcttttgtt |
250 |
Q |
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| T |
39241224 |
gttgtctcaaatggttgttaaaatatcactactcttttgtt |
39241184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 32510904 - 32510871
Alignment:
| Q |
91 |
aaaaaattatatttatacaaccactttatgataa |
124 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
32510904 |
aaaaaattatatttatacaaccaatttatgataa |
32510871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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