View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18138_low_18 (Length: 253)
Name: NF18138_low_18
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_18 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 44307151 - 44306899
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44307151 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
44307052 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44307051 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
44306952 |
T |
|
| Q |
201 |
aatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattg |
253 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44306951 |
aatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattg |
44306899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 43896691 - 43896449
Alignment:
| Q |
7 |
tcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatagcacgga |
106 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || || |
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| T |
43896691 |
tcagaggttgatgataaactttctgaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgtagggcaactatatcaatga |
43896592 |
T |
|
| Q |
107 |
aatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtccaatcga |
206 |
Q |
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||||||||||||||||||||||| | || |||| |||||| | || |||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
43896591 |
aatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaattaggtatttgccgggtccaatcga |
43896492 |
T |
|
| Q |
207 |
tgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
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|||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
43896491 |
tgttagtaattatgctcttgatcaaaataggaatggtgagaaa |
43896449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44302049 - 44301797
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||| |
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| T |
44302049 |
attgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaattcgtggggcaaccatag |
44301950 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgagggg----ttagaactacttagggagggtgtaattaggtatttgccaa |
196 |
Q |
| |
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|| ||||||||||||||||||| ||||||| | |||||| |||||||| |||||| ||||||||||||| ||||| |||||||||||||||||| | |
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| T |
44301949 |
caaggaaatttgtaccaatttttatgggtattatcagtggtgagagatatgaggggttaattagaactacttatggaggatgtaattaggtatttgccga |
44301850 |
T |
|
| Q |
197 |
gtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
44301849 |
gtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaa |
44301797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 44317333 - 44317160
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
44317333 |
attgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatat |
44317234 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaatt |
183 |
Q |
| |
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|| |||||||||||||||| || || ||||| |||||| | ||||||||||||||| ||| ||||||||||||| |
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|
| T |
44317233 |
caatgaaatttgtaccaattatc---------tttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
44317160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 44312753 - 44312682
Alignment:
| Q |
178 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaa |
44312682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 18702296 - 18702057
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
18702296 |
attgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagcaaaattccagagtctgttctcgatgatgcaattcgtagggcaactatat |
18702197 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
200 |
Q |
| |
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|| |||||||||||||||| |||| | |||| ||||| || ||| |||| ||||| | | |||||||||||||||||||||||||||||| |
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|
| T |
18702196 |
caatgaaatttgtaccaattatcattg---------gtgatgagagctatgagacgttaaaactattaatggagggtgtaattaggtatttgccaagtcc |
18702106 |
T |
|
| Q |
201 |
aatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18702105 |
aatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaa |
18702057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4084806 - 4084567
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |||| |
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|
| T |
4084806 |
attgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagagtcttatctcgatggtgcaattcgtagggcaactatag |
4084707 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
200 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| ||||| |
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|
| T |
4084706 |
caaggaaatttgtaccaattatca---------tcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttgccgagtcc |
4084616 |
T |
|
| Q |
201 |
aatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
4084615 |
aatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaa |
4084567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 8158668 - 8158907
Alignment:
| Q |
1 |
attgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatag |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||| |||| |
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|
| T |
8158668 |
attgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatctggatgatgcaattcggagggcaactatag |
8158767 |
T |
|
| Q |
101 |
cacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtcc |
200 |
Q |
| |
|
|| ||||||||||||||||| ||| | ||||| |||||||| |||||| ||||| || ||| |||||||||||||||||||||||| ||||| |
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|
| T |
8158768 |
caaggaaatttgtaccaattatca---------taagtgatgagagatatgaggggatagaagtatttatggagggtgtaattaggtatttgccgagtcc |
8158858 |
T |
|
| Q |
201 |
aatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaa |
249 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
8158859 |
aatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaa |
8158907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 35856486 - 35856535
Alignment:
| Q |
80 |
caattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggt |
129 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
35856486 |
caattcgtagggctacaatagcaaggaaatttgtaccaattttcatgggt |
35856535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 10492832 - 10492781
Alignment:
| Q |
79 |
gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta |
130 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10492832 |
gcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggta |
10492781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 6915256 - 6915307
Alignment:
| Q |
79 |
gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta |
130 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| | |||||||||| |
|
|
| T |
6915256 |
gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta |
6915307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 7476567 - 7476618
Alignment:
| Q |
79 |
gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta |
130 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
7476567 |
gcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggta |
7476618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 10463647 - 10463596
Alignment:
| Q |
79 |
gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta |
130 |
Q |
| |
|
||||||||||| || || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10463647 |
gcaattcgtagagccacgatagcacggaaatttataccatttttcatgggta |
10463596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 10474218 - 10474173
Alignment:
| Q |
83 |
ttcgtagggcaaccatagcacggaaatttgtaccaattttcatggg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
10474218 |
ttcgtagggccaccatagcacggaagtttataccaatattcatggg |
10474173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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