View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_23 (Length: 238)
Name: NF18138_low_23
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_23 |
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| [»] chr8 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44307647 - 44307410
Alignment:
| Q |
1 |
ctataaaaacataaccgtatttgatgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcttgttctttcttgtctttat |
100 |
Q |
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| T |
44307647 |
ctataaaaacataaccgtatttgatgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcctgttctttcttgtctttat |
44307548 |
T |
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| Q |
101 |
ggtgttaaaattgaaaccattgccatttttcaacaaatgacaagatttcaatttccaatgtttatatttatagacgatattgagttggaaggagcagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44307547 |
ggtgttaaaattgaaaccattgccatttttcaacaaatgacaagatttcaatttccaatgtttatatttatagacgatattgagctggaaggagcagatc |
44307448 |
T |
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| Q |
201 |
catgaaacttttttgatcaagtaaaatctaagcttaat |
238 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
44307447 |
catggaacttttttgatcaagtaaaatctaagcttaat |
44307410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 44302407 - 44302256
Alignment:
| Q |
18 |
tatttgatgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcttgttctttcttgtctttatggtgttaaaattgaaac |
117 |
Q |
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| T |
44302407 |
tatttgatgttaattcaattgttgatgctgaaataactttgcatattttcgacagtgcaattcttgttctttcttgtcgagattgtgttaaaaatgaatc |
44302308 |
T |
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| Q |
118 |
cattgccatttttcaacaaatgacaagatttcaatttccaatgtttatattt |
169 |
Q |
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| T |
44302307 |
cattgctatttatcaacaaatgacaagatttcaatttccaaggcttatattt |
44302256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 44317794 - 44317580
Alignment:
| Q |
24 |
atgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcttgttctttcttgtctttatggtgttaaaattgaaaccattgc |
123 |
Q |
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||||||||| || |||||||| | || || ||| | |||||| ||||||||| ||||||||||||||||| || ||||||||| || ||| ||||| | |
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| T |
44317794 |
atgttgatttcaatgttgatgttcaactagcttctcgtatttttgacagtgcaattcttgttctttcttgtgttaatggtgttagaaccgaatccattac |
44317695 |
T |
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| Q |
124 |
catttttcaacaaatgacaagatttcaatttccaatgtttatatttatagacgatattgagttggaaggagcagatccatgaaacttttttgatcaagta |
223 |
Q |
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| T |
44317694 |
tattgatcaacaaatgacaagatttcaacttccaaggcttatatttattgacgatctttatgaggaaggagcagatctatggaacattgtagatcaagta |
44317595 |
T |
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| Q |
224 |
aaatctaagcttaat |
238 |
Q |
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| T |
44317594 |
aaatctaagcttaat |
44317580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 43897174 - 43897086
Alignment:
| Q |
3 |
ataaaaacataaccgtatttgatgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcttgttctttct |
91 |
Q |
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| T |
43897174 |
ataaaaacataaccctaatcgaagttgattccattgttgatgctgaaatagcttcacatattttcgacagttcaattcttgttctttct |
43897086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 43897061 - 43897020
Alignment:
| Q |
130 |
tcaacaaatgacaagatttcaatttccaatgtttatatttat |
171 |
Q |
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| T |
43897061 |
tcaacaaatgacaagatttcaatttccaaggcttatatttat |
43897020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 8158266 - 8158436
Alignment:
| Q |
68 |
gacagtgcagttcttgttctttcttgtctttatggtgttaaaattgaaaccattgccatttttcaacaaatgacaagatttcaatttccaatgtttatat |
167 |
Q |
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||||||||| |||||||||||||||||| |||||||||||| ||| ||||| | ||| |||||||||||||||||||||| |||||| | |||||| |
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| T |
8158266 |
gacagtgcaattcttgttctttcttgtcgagatggtgttaaaaccgaatccattactattgatcaacaaatgacaagatttcaacttccaaggcttatat |
8158365 |
T |
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| Q |
168 |
ttatagacgatattgagttggaaggagcagatccatgaaacttttttgatcaagtaaaatctaagcttaat |
238 |
Q |
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| T |
8158366 |
ttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagcttaat |
8158436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 4085261 - 4085047
Alignment:
| Q |
24 |
atgttgattccattgttgatgctgaaatacctttgcatattttcgacagtgcagttcttgttctttcttgtctttatggtgttaaaattgaaaccattgc |
123 |
Q |
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||||||||| || ||||||| | || || ||| || |||||||||||||||| || ||||||||||||||||| |||||||||| | ||| ||||| |
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| T |
4085261 |
atgttgatttcaacgttgatgttcaactagcttcgcgtattttcgacagtgcaattattgttctttcttgtcttgatggtgttaagaccgaatccattat |
4085162 |
T |
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| Q |
124 |
catttttcaacaaatgacaagatttcaatttccaatgtttatatttatagacgatattgagttggaaggagcagatccatgaaacttttttgatcaagta |
223 |
Q |
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||| |||||||||||||||||||||| |||||| | |||||||||| |||||| |||| | |||||||||||| ||| ||| | | ||||||||| |
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| T |
4085161 |
tattgatcaacaaatgacaagatttcaacttccaaggcttatatttattgacgatcttgatcagaaaggagcagatctatggaacatcgtagatcaagta |
4085062 |
T |
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| Q |
224 |
aaatctaagcttaat |
238 |
Q |
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||||||||||||||| |
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| T |
4085061 |
aaatctaagcttaat |
4085047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 18702714 - 18702537
Alignment:
| Q |
61 |
tattttcgacagtgcagttcttgttctttcttgtctttatggtgttaaaattgaaaccattgccatttttcaacaaatgacaagatttcaatttccaatg |
160 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||||||| || ||||| | || |||||||||||||||||||||| |||| | | |
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| T |
18702714 |
tattttcgacagtgcaattcttgttctttcttgtgttgatggtgttaaaaccaaatccattactatggatcaacaaatgacaagatttcaacttcctagg |
18702615 |
T |
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| Q |
161 |
tttatatttatagacgatattgagttggaaggagcagatccatgaaacttttttgatcaagtaaaatctaagcttaat |
238 |
Q |
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|||||||||| |||||| | | |||||||||||||| ||| ||| || | |||||||||||||||||||||||| |
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| T |
18702614 |
cttatatttattgacgatctgtatcaggaaggagcagatctatggaacattgtagatcaagtaaaatctaagcttaat |
18702537 |
T |
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