View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_24 (Length: 238)
Name: NF18138_low_24
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 5680670 - 5680448
Alignment:
| Q |
17 |
aattgcgaagtttgaaacc-gttggagaaataaaattatctaattttacgttacctgaaagattattagcttcattaggtgtaagtaatgctgcaaagcc |
115 |
Q |
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| T |
5680670 |
aattgcgaagtttgaaacccgttggagaaataaaattatctaattttacgttacctgaaagattattggcttcattaggtgtaagtaatgctgcaaagcc |
5680571 |
T |
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| Q |
116 |
attgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttca |
215 |
Q |
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| T |
5680570 |
attgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttca |
5680471 |
T |
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| Q |
216 |
tgcagttttttatctccattaat |
238 |
Q |
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| T |
5680470 |
tgcagtgttttatctcctttaat |
5680448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 5689930 - 5689760
Alignment:
| Q |
66 |
ttacctgaaagattattagcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcct |
165 |
Q |
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|||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||| | | |||||| |||| |
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| T |
5689930 |
ttacctgagagattattggcttcatttggtgtaagtaatgctgcaaaaccattgaaagtgtgtttataactataaagaagggaaaccctagcttcctcct |
5689831 |
T |
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| Q |
166 |
cagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccatta |
236 |
Q |
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| T |
5689830 |
cagtttcttttaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatgtccatta |
5689760 |
T |
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