View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_26 (Length: 237)
Name: NF18138_low_26
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 5680441 - 5680358
Alignment:
| Q |
4 |
ctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
87 |
Q |
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| T |
5680441 |
ctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
5680358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 5680292 - 5680215
Alignment:
| Q |
153 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatgatgatgt |
230 |
Q |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatgatgatgt |
5680215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
153 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
197 |
Q |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5689757 - 5689719
Alignment:
| Q |
1 |
gtgctctccaagttcaactagataaacctgtgagaaaat |
39 |
Q |
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| T |
5689757 |
gtgctctccaaattccactagataaacctgtgagaaaat |
5689719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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