View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18138_low_3 (Length: 577)

Name: NF18138_low_3
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18138_low_3
NF18138_low_3
[»] chr2 (10 HSPs)
chr2 (17-308)||(18929235-18929526)
chr2 (19-308)||(26650839-26651130)
chr2 (25-308)||(17402729-17403013)
chr2 (38-253)||(25520385-25520601)
chr2 (69-253)||(31404020-31404205)
chr2 (181-298)||(19878972-19879090)
chr2 (69-253)||(24543870-24544054)
chr2 (144-253)||(29891239-29891348)
chr2 (85-228)||(20478255-20478396)
chr2 (121-253)||(28760593-28760724)
[»] chr7 (13 HSPs)
chr7 (19-304)||(20145813-20146098)
chr7 (21-308)||(2546914-2547198)
chr7 (37-308)||(14987006-14987278)
chr7 (37-308)||(15416617-15416889)
chr7 (25-253)||(17600539-17600766)
chr7 (59-308)||(24832402-24832657)
chr7 (19-253)||(3743380-3743620)
chr7 (66-253)||(4173426-4173615)
chr7 (142-253)||(10649207-10649318)
chr7 (143-202)||(5531725-5531784)
chr7 (85-202)||(18046386-18046501)
chr7 (85-130)||(14961170-14961215)
chr7 (85-130)||(15390642-15390687)
[»] chr8 (16 HSPs)
chr8 (19-308)||(28371034-28371324)
chr8 (24-308)||(9218079-9218367)
chr8 (69-252)||(9286315-9286498)
chr8 (22-148)||(10660970-10661095)
chr8 (110-253)||(23540207-23540351)
chr8 (107-253)||(16600591-16600737)
chr8 (141-303)||(10661748-10661911)
chr8 (80-222)||(13110204-13110345)
chr8 (177-253)||(24577332-24577408)
chr8 (80-220)||(18672125-18672261)
chr8 (85-253)||(25095053-25095223)
chr8 (110-157)||(26136195-26136242)
chr8 (85-175)||(22713661-22713751)
chr8 (85-253)||(27123570-27123736)
chr8 (85-127)||(9006931-9006973)
chr8 (84-140)||(24680835-24680890)
[»] chr5 (16 HSPs)
chr5 (45-308)||(19217915-19218177)
chr5 (59-308)||(20064397-20064653)
chr5 (59-306)||(20060802-20061056)
chr5 (110-308)||(20713228-20713426)
chr5 (110-308)||(23210042-23210240)
chr5 (59-304)||(20058571-20058824)
chr5 (141-301)||(23379314-23379474)
chr5 (129-308)||(25951334-25951513)
chr5 (85-253)||(17167249-17167417)
chr5 (85-241)||(19923956-19924112)
chr5 (69-202)||(24878356-24878489)
chr5 (85-241)||(19926683-19926839)
chr5 (85-223)||(17987482-17987619)
chr5 (194-253)||(21165282-21165342)
chr5 (21-52)||(24878288-24878319)
chr5 (65-97)||(25951260-25951292)
[»] chr3 (16 HSPs)
chr3 (26-304)||(24698999-24699275)
chr3 (19-307)||(15686859-15687148)
chr3 (25-253)||(26010836-26011067)
chr3 (38-253)||(13428700-13428914)
chr3 (46-253)||(4769742-4769949)
chr3 (21-253)||(4765677-4765916)
chr3 (110-308)||(7148790-7148988)
chr3 (19-253)||(4832504-4832740)
chr3 (102-308)||(9033415-9033622)
chr3 (113-308)||(29614529-29614724)
chr3 (75-253)||(23378488-23378668)
chr3 (110-250)||(16242928-16243069)
chr3 (79-202)||(27304424-27304547)
chr3 (85-127)||(13409834-13409876)
chr3 (79-153)||(8737234-8737308)
chr3 (79-153)||(9089472-9089546)
[»] chr6 (12 HSPs)
chr6 (19-250)||(22397545-22397777)
chr6 (110-308)||(16177304-16177502)
chr6 (28-228)||(17524797-17524998)
chr6 (110-306)||(1177150-1177349)
chr6 (114-308)||(15830026-15830220)
chr6 (85-250)||(17947842-17948007)
chr6 (69-222)||(14762938-14763090)
chr6 (69-202)||(18713709-18713842)
chr6 (59-308)||(31126082-31126351)
chr6 (85-127)||(25945847-25945889)
chr6 (71-172)||(28712360-28712461)
chr6 (121-172)||(13002854-13002906)
[»] chr4 (7 HSPs)
chr4 (19-290)||(11361595-11361866)
chr4 (26-308)||(9409083-9409370)
chr4 (69-251)||(16675086-16675269)
chr4 (110-172)||(5358040-5358102)
chr4 (152-250)||(8140832-8140930)
chr4 (85-253)||(4697470-4697638)
chr4 (85-127)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (64-308)||(20146169-20146420)
chr1 (45-253)||(11013817-11014027)
chr1 (75-253)||(33103021-33103201)
chr1 (69-241)||(36571655-36571826)
chr1 (69-239)||(22607834-22608003)
chr1 (88-253)||(20150422-20150588)
chr1 (113-253)||(13202052-13202192)
chr1 (85-250)||(17615274-17615439)
chr1 (112-202)||(22620063-22620153)
chr1 (190-253)||(13232737-13232801)
chr1 (69-141)||(20866221-20866293)
chr1 (91-127)||(20886571-20886607)
[»] scaffold0555 (1 HSPs)
scaffold0555 (64-308)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (19-305)||(20793-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (141-301)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (69-241)||(17221-17392)
scaffold0337 (69-228)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (89-253)||(374113-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (100-253)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (117-253)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (261-307)||(5989-6035)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 18929235 - 18929526
Alignment:
Q  17 cctgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcatta 116  Q
    |||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18929235 cctgtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcatta 18929333  T
Q  117 aaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgattt 216  Q
    ||||||||||| |||||| ||||| |||||||||||||||||| ||| | ||||||| | |||||||||||| |||||||||||| | ||||||||||||    
T  18929334 aaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgattt 18929433  T
Q  217 gcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    || |||| ||||  || |||||||||  ||||||| || ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18929434 gcaacccattttccctttggaaaactactatttatgcatagaaaataacttggaaagaaactaatcccacgatcaacactccttccatgtaga 18929526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 26650839 - 26651130
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 117  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||     
T  26650839 tgtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattat 26650938  T
Q  118 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 217  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||| |||||||||||| |||||||||||||||    
T  26650939 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttg 26651038  T
Q  218 cgacccgtttt-tctatggaaaactcttatttatacaaag-atactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||| |||||  |||||||||||||||||||||||| || | | |||| | ||||||||| |||||||| || | ||||| |||||||||||    
T  26651039 cgacctgttttccctatggaaaactcttatttatacatagaaaaataac-tagaaagaaaccaatcccacgattagcactcattccatgtaga 26651130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 17402729 - 17403013
Alignment:
Q  25 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 124  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  125 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 224  Q
    ||| |||  |||||||||||||||||||||||||| ||| ||||||||||  ||||||||| || |||||||||||| | |||||||||||||||||| |    
T  17402829 ggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgacctg 17402928  T
Q  225 tttttc-tatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |||| | |||||| ||||  |||||||||| |||| | |||| |||||| |    |||||||| |||||||||||||||| |||||    
T  17402929 ttttccttatggagaactactatttatacataagaaaataac-tggaaaaagcataatcccacgatcaacactccttccacgtaga 17403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 25520601 - 25520385
Alignment:
Q  38 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 137  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| || |||||| |||| |||| |||| |||||||||||||||||  |||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  138 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatgga 236  Q
    | |||||||||||||| | ||| ||||||||||||||| |||  ||||||| ||||||| |||| |||||||||||||||| |||||||||  |||||||    
T  25520501 aacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgcaacccgttttccctatgga 25520402  T
Q  237 aaactcttatttataca 253  Q
    ||||| |||||||||||    
T  25520401 aaactattatttataca 25520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 69 - 253
Target Start/End: Complemental strand, 31404205 - 31404020
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 167  Q
    ||||||||| ||||| ||||||||| ||||||||| | || ||||||||||  |||||| |||||||||||| ||| ||||||||||| ||| |||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactcttt 31404106  T
Q  168 tctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    |||||||| |||||||||||| |||||||||| |||  ||| |||||||||||||| ||||   |||||||||||  ||||||||||    
T  31404105 tctctcgcgccggtacttcgagtgttttagaa-tttcaataagtgatttgcgacccattttcaatatggaaaactactatttataca 31404020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 181 - 298
Target Start/End: Original strand, 19878972 - 19879090
Alignment:
Q  181 tacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaa 279  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||| |||| ||| | ||| |||||||||||| ||    
T  19878972 tacttctagtgttttagaattctgtataggtgatttgcgacccgtttttcctatggaaaactactatttttacatagaaaataagttggaaagaaactaa 19879071  T
Q  280 tcccacaatcaacactcct 298  Q
    |||||| ||||||||||||    
T  19879072 tcccacgatcaacactcct 19879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 24543870 - 24544054
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||||||||  |||||  ||||||  |||| | || |||||||||||||||||| |||| | |||||||||||||| ||| | ||| | ||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatctttt 24543969  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 253  Q
    ||||||| ||| |||||||| |||| |  || ||| |||| |||||||| ||||||||||| ||||||||||||  ||||||||||    
T  24543970 ctctcgcgccgatacttcgagtgttgt-caaatttctataagtgatttgtgacccgtttttcctatggaaaactactatttataca 24544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 29891348 - 29891239
Alignment:
Q  144 tacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactc 242  Q
    |||||||||| | ||| | ||||||||||||| ||| ||||| || ||||||| || ||| |||| ||||| ||||||||||||||| |||||| ||||     
T  29891348 tacatacattttgtataaatcttttctctcgcgccgatactttgagtgttttataa-tttctataagtgatctgcgacccgtttttcatatggacaacta 29891250  T
Q  243 ttatttataca 253  Q
     ||||||||||    
T  29891249 ctatttataca 29891239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 20478396 - 20478255
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcgctccggtac 183  Q
    |||||||||||||    |||| |||| |||||||| ||||||| || | |||||||  |||||||||||||| ||| |||| |||| ||||| ||||||     
T  20478396 aacttaaaggaaaacataaatgcaattcattaaaattaaaggtggt-ctacaaatcagtttacatacattctgtataactcgtttccctcgcgccggtag 20478298  T
Q  184 ttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 228  Q
    || || |||| ||||||| ||||||  ||||||||||||| ||||    
T  20478297 tttgagtgttgtagaattatgtata--tgatttgcgacccatttt 20478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 28760724 - 28760593
Alignment:
Q  121 taaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcg-ctccggtacttcgaatgttttagaattttgtataggtgatttgc 218  Q
    ||||||| ||||||||||||  |||||||||||||| ||| |||||||||||| | | ||||||||||||  ||  ||||||||  ||||  ||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctctagacgccggtacttcga--gtgctagaattt--tataaatgatttgc 28760629  T
Q  219 gacccgtttttc-tatggaaaactcttatttataca 253  Q
    | |  ||||||| |||| ||||||||||||||||||    
T  28760628 gtcttgtttttcatatgaaaaactcttatttataca 28760593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 20145813 - 20146098
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  20145813 tgtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaa 20145911  T
Q  119 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 218  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||| |||||||||||| || || ||||||||||    
T  20145912 aataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgc 20146011  T
Q  219 gacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 304  Q
    ||||||||||  ||||| ||||||  |||||||||| ||  | |||||||||||||||| |||||||| |||| |||||||||||||    
T  20146012 gacccgttttacctatgaaaaactactatttatacataggaaataacttggaaagaaactaatcccacgatcagcactccttccatg 20146098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 2546914 - 2547198
Alignment:
Q  21 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaa 120  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  121 taaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcga 220  Q
    ||||||| ||  | |||||||||||||| |||||||||| ||| ||||||||||   ||||||||||| |||||||||||| | ||||||||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcga 2547109  T
Q  221 cccgtttt-tctatggaaaactcttatttatacaaag-atactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||||||  |||||||||||| ||| ||||||| || | | |||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  2547110 cccgttttccctatggaaaactattacttatacatagaaaaataac-tagaaagaaactaatcccacgatcaacactccttccatgtaga 2547198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 37 - 308
Target Start/End: Complemental strand, 14987278 - 14987006
Alignment:
Q  37 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 135  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  136 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 234  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  14987178 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 14987079  T
Q  235 gaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||||||||||||||||||||| | |||  |||||||||||  ||| ||| |||| |||||||||||||||||    
T  14987078 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtaga 14987006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 37 - 308
Target Start/End: Complemental strand, 15416889 - 15416617
Alignment:
Q  37 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 135  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  136 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 234  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  15416789 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 15416690  T
Q  235 gaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||||||||||||||||||||| | |||  |||||||||||  ||| ||| |||| |||||||||||||||||    
T  15416689 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtaga 15416617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 17600539 - 17600766
Alignment:
Q  25 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 124  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| ||  |||||||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  125 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 224  Q
    ||| ||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  17600637 ggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgacacg 17600736  T
Q  225 tttttc-tatggaaaactcttatttataca 253  Q
    |||| | |||||||||||  ||||||||||    
T  17600737 ttttccttatggaaaactactatttataca 17600766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 308
Target Start/End: Original strand, 24832402 - 24832657
Alignment:
Q  59 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 151  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||| ||| ||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  152 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 250  Q
    |||||||| |||||||||||| || ||| |||||||| ||||||| |||| |||||||| |||||||||||||||||  ||||| |||||| ||||||||    
T  24832502 ttctttatgactcttttctcttgcgccgatacttcgagtgtttta-aattctgtataggcgatttgcgacccgttttccctatgaaaaactattatttat 24832600  T
Q  251 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||| ||  | |||  | ||||||||| |||| ||  |||| |||||||||||||||||    
T  24832601 acataggaaataa-gtagaaagaaactaatctcatgatcaccactccttccatgtaga 24832657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 3743380 - 3743620
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcaggaacttaaaggaaaggtaaaatacaatgcat 114  Q
    ||||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||| | ||| |||||||  |||| ||||| ||||    
T  3743380 tgtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcat 3743479  T
Q  115 taaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtga 213  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||||| ||||||||||   || |||||||||||| || |||||||||| |||||||||||    
T  3743480 taaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtga 3743579  T
Q  214 tttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    ||||||||||||||| ||| |||||||||  ||||||||||    
T  3743580 tttgcgacccgttttctctttggaaaactactatttataca 3743620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 66 - 253
Target Start/End: Complemental strand, 4173615 - 4173426
Alignment:
Q  66 attaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactc 164  Q
    |||||||||||||||||| ||||||||| |||    |||| ||| ||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactc 4173516  T
Q  165 ttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    |||||||||||  || |||||||| |||||||||||| | |||||| |||||||||||||||||  ||||||||| ||  ||||||||||    
T  4173515 ttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgacccgttttccctatggaaatctaatatttataca 4173426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 10649318 - 10649207
Alignment:
Q  142 tttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaac 240  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||| |||||| ||| ||| |||| |||||||||||| | ||||  ||||||| |||    
T  10649318 tttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt-gaaatttctataagtgatttgcgactcattttccctatggacaac 10649220  T
Q  241 tcttatttataca 253  Q
    |  ||||||||||    
T  10649219 tactatttataca 10649207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 5531784 - 5531725
Alignment:
Q  143 ttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 202  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||||| |||| || |||||    
T  5531784 ttacatacattttgtataactcttttctctcgcaccggtacttcgagtgttgtataattt 5531725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 18046386 - 18046501
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 183  Q
    ||||||||| ||||||||| | || |||||||||| ||||||| |||||||||||| | ||||| ||||| | |||    ||||| |||||| |||||||    
T  18046386 aacttaaagaaaaggtaaattgcattgcattaaaa-taaaggtggttcgacaaatcatattacacacattatgtat--gccttttttctcgcgccggtac 18046482  T
Q  184 ttcgaatgttttagaattt 202  Q
    ||| | |||||||||||||    
T  18046483 ttcaattgttttagaattt 18046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 14961170 - 14961215
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 130  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  14961170 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 14961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 15390642 - 15390687
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 130  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  15390642 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 15390687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 28371034 - 28371324
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  28371034 tgtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaa 28371133  T
Q  119 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 218  Q
    ||||||||  ||||||||||| ||||||||||||||||||| ||| ||||| ||| | | |||||||||| |||||||||||||| ||||||||||||||    
T  28371134 aataaaggaggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgc 28371233  T
Q  219 gacccgtttt-tctatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||| ||||  ||||||||||||  |||||||||| |||| | |||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  28371234 gacccattttccctatggaaaactactatttatacataaga-aataacttggaaagaaactaatctcacgatcagcactccttccatgtaga 28371324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 24 - 308
Target Start/End: Original strand, 9218079 - 9218367
Alignment:
Q  24 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 119  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  120 ataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcg 219  Q
    |||||| | |||||||||||| |||||||||||||| ||| |  ||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattctgtatga--cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcg 9218276  T
Q  220 acccgtttt-tctatggaaaactcttatttataca-aagatactaacttggaaagaaac-gaatcccacaatcaacactccttccatgtaga 308  Q
    |||||||||  |||||||||||   |||||||||| || | |||||| || ||| || |  |||||||  ||||||||||||||||||||||    
T  9218277 acccgttttccctatggaaaacaactatttatacataataaactaac-tgcaaaaaagcacaatcccatgatcaacactccttccatgtaga 9218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 9286498 - 9286315
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||  |||| |||| | || |||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactatttt 9286399  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttatac 252  Q
    ||||||| |||||||||||| |||| ||||| ||| |||| |||||||||||||||||||  ||||||||||||  |||||||||    
T  9286398 ctctcgcaccggtacttcgagtgttgtagaa-tttctatatgtgatttgcgacccgttttccctatggaaaactactatttatac 9286315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  22 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 121  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  122 aaaggtagttcgacaaatcctttacat 148  Q
    |||||| ||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 23540351 - 23540207
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||||||||| |  ||||||||| || | |||||||||| |||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtatag 23540252  T
Q  210 gtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    ||||||||| |||||||||  ||||||||||||  ||||||||||    
T  23540251 gtgatttgcaacccgttttccctatggaaaactactatttataca 23540207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 16600591 - 16600737
Alignment:
Q  107 caatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgta 206  Q
    |||||||||||||||||| || |||||||||||||||||| |||||| | ||| ||||| ||||||||| |||||||||||| |||| ||||| ||| ||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaa-tttcta 16600689  T
Q  207 taggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 253  Q
    || ||||||||| |||||||||| ||||||||||||  ||||||||||    
T  16600690 taagtgatttgcaacccgtttttcctatggaaaactactatttataca 16600737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 10661748 - 10661911
Alignment:
Q  141 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtttt-agaattttgtataggtgatttgcgacccgtttttcta-tggaaa 238  Q
    ||||||||||||||||||| |||||||| | |||| ||||||| | ||  ||||| |||||| |||||||||||||||||||| ||||| | | ||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttgcgacctgttttcccaatggaaa 10661847  T
Q  239 actcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccat 303  Q
    ||||||||||||||| ||| |  |||| |||||||||| |||||||| |||||||||||||||||    
T  10661848 actcttatttatacatagaaaacaact-ggaaagaaactaatcccacgatcaacactccttccat 10661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 13110204 - 13110345
Alignment:
Q  80 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 179  Q
    |||| ||||||||| |||| |||| | || |||||||||||||||||| |||| ||||||| | |||||| ||| | ||| ||||||||||||| | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  180 gtacttcgaatgttttagaattttgtataggtgatttgcgacc 222  Q
    ||||||||| |||| ||||| ||| |||| |||||||||||||    
T  13110304 gtacttcgagtgttgtagaa-tttctataagtgatttgcgacc 13110345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 24577408 - 24577332
Alignment:
Q  177 ccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca 253  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||| ||||||  ||||||||||    
T  24577408 ccggtacttcgattgttttagaattctgtataggtgatttgccacccgttttcctatgaaaaactactatttataca 24577332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 18672261 - 18672125
Alignment:
Q  80 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 179  Q
    |||| ||||| ||| |||| |||| |||| ||||||||||||||||||   || ||||||| |||||||||||| | ||| ||||||||||||| | ||     
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttctctctcgcca 18672165  T
Q  180 gtacttcgaatgttttagaattttgtataggtgatttgcga 220  Q
    ||||||||| |||| ||||| ||| |||| |||||||||||    
T  18672164 gtacttcgagtgttgtagaa-tttctataagtgatttgcga 18672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 85 - 253
Target Start/End: Original strand, 25095053 - 25095223
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtac 183  Q
    ||||||||| |||| |||| | || |||||| | ||||||||| |||||||||||  ||| ||||||||  | ||| |||||||| |||||| |||||||    
T  25095053 aacttaaagaaaagataaattgcattgcatttataataaaggtggttcgacaaataattttacatacatcatgtataactcttttatctcgcgccggtac 25095152  T
Q  184 ttcgaatgttttagaattttgtataggtgatttgcgacccgttttt--ctatggaaaactcttatttataca 253  Q
    ||||  |||||||||| ||| |||| ||||||||||  | ||||||   |||||||||||  ||||||||||    
T  25095153 ttcgggtgttttagaa-tttctataagtgatttgcggtctgttttttaatatggaaaactactatttataca 25095223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttt 157  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 22713751 - 22713661
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgc 175  Q
    ||||||||| |||| |||  |||| |||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| | |||||||| ||||    
T  22713751 aacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatcttttctatcgc 22713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 27123736 - 27123570
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 183  Q
    |||||||||||| | |||| | || |||||||||| ||||||| |||||| |||||   ||||||||||| | ||| |||||||||||||||  ||||||    
T  27123736 aacttaaaggaatgataaattgcattgcattaaaa-taaaggtggttcgataaatcagattacatacattatgtataactcttttctctcgcatcggtac 27123638  T
Q  184 ttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 253  Q
    |  || |||| ||||| ||| ||||  ||||||||||| | ||||| ||||||||||||  ||||||||||    
T  27123637 t--gagtgttgtagaa-tttctataattgatttgcgactcatttttcctatggaaaactactatttataca 27123570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 9006931 - 9006973
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 127  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  9006931 aacttaaaggaaaggtaaaatgtattgcattaaaaataaaggt 9006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 24680890 - 24680835
Alignment:
Q  84 gaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc 140  Q
    |||||||||| ||||||||| |||| |||||||||| |||| || ||||||||||||    
T  24680890 gaacttaaagaaaaggtaaattacattgcattaaaa-taaatgtggttcgacaaatc 24680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 8e-81; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 45 - 308
Target Start/End: Complemental strand, 19218177 - 19217915
Alignment:
Q  45 ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt 144  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  145 acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactct 243  Q
    |||||||||||||||  |||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||  |||||||||||  |    
T  19218077 acatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaa-tttgtataggtgatttgcgacccgttttccctatggaaaacagt 19217979  T
Q  244 tatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |||||||||| | | | |||| ||||||||||| |||||||| | || |||||||| ||||||||    
T  19217978 tatttatacataaaaaataac-tggaaagaaactaatcccacgaccagcactcctttcatgtaga 19217915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 308
Target Start/End: Complemental strand, 20064653 - 20064397
Alignment:
Q  59 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 151  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||| ||       |||||||||||||||||| |||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  152 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 250  Q
    || ||||| |||||||||||| || |||||||||  | |||||||||||| |||||||| |||||||||||||||||  |||||||||||| ||||||||    
T  20064553 ttttttataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgacccgttttccctatggaaaactattatttat 20064454  T
Q  251 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||| ||  | |||  ||||||||||| ||||||||||||| ||| |||||||||||||    
T  20064453 acatagtaaataa-gtggaaagaaactaatcccacaatcagcacaccttccatgtaga 20064397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 306
Target Start/End: Original strand, 20060802 - 20061056
Alignment:
Q  59 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 151  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  152 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt-ttttctatggaaaactcttatttat 250  Q
    || ||||| |||||||||||| || |||||| ||| |||||||||||||| |||||||| ||||||| |||||| |   |||||||||||| | ||||||    
T  20060902 ttgtttatgactcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgcaacccgtctaccctatggaaaactatcatttat 20061001  T
Q  251 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgta 306  Q
    ||| ||  | ||| || ||||||||| |||||||| |||| ||||| || ||||||    
T  20061002 acataggaagtaagtt-gaaagaaactaatcccacgatcatcactcattacatgta 20061056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 20713228 - 20713426
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||| |||||||||||| ||  ||||| ||||| |||||||||||| ||||||     
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatat 20713327  T
Q  210 gtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    | |||||||||||||||||  |||||||||||| ||||||||||| ||  | ||| || ||||||||| |||||||| |||| |||||||||||||||||    
T  20713328 gcgatttgcgacccgttttccctatggaaaactattatttatacataggaaataagtt-gaaagaaactaatcccacgatcagcactccttccatgtaga 20713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 110 - 308
Target Start/End: Complemental strand, 23210240 - 23210042
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||| |||||||||||| ||||||     
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttagaattatgtatat 23210141  T
Q  210 gtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
      ||||||||||| |||||  |||||| ||||| ||||||||||| ||  | |||  ||||||||||| |||||||| ||||||||||||||||| ||||    
T  23210140 acgatttgcgacctgttttccctatgggaaactattatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatttaga 23210042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 20058824 - 20058571
Alignment:
Q  59 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 151  Q
    |||| |||||||||||||||||||| ||||||||  |||   |||||||||       |||||||||||||||||| ||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  152 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttat 250  Q
    |||||||| |||||||||||| || |  |||||| |||||||||||||||||| ||||| ||||||| ||| || |  | ||||||||||| | ||||||    
T  20058724 ttctttatgactcttttctcttgcgctagtactttgaatgttttagaattttgcataggcgatttgcaacctgtctaccttatggaaaactatcatttat 20058625  T
Q  251 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 304  Q
    ||| ||  | ||| | | ||| |||| |||||||| |||| |||||||||||||    
T  20058624 acataggaagtaagtggaaaaaaaactaatcccacgatcagcactccttccatg 20058571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 23379474 - 23379314
Alignment:
Q  141 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 239  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 23379375  T
Q  240 ctcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttcc 301  Q
    ||  |||||||||| ||| | |||   | |||||||| |||||||| |||||||||||||||    
T  23379374 ctactatttatacatagaaaataa-gagtaaagaaactaatcccacgatcaacactccttcc 23379314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 25951334 - 25951513
Alignment:
Q  129 gttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 228  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  | |||||||| || |||||||||||| |||||| | ||||| ||||| |||||    
T  25951334 gttcgacaaatcttttacatacattctttatgactcttttctctctgt-cggtactttgagtgttttagaattatgtataagcgatttacgacctgtttt 25951432  T
Q  229 -tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
      |||||||||||| |||||||||||  |  | ||| | | |||||||| |||| ||| ||||||||||||||||||||||    
T  25951433 acctatggaaaactattatttatacatcggaaataagtggaaaagaaactaatctcacgatcaacactccttccatgtaga 25951513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 17167417 - 17167249
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 184  Q
    ||||||||| |||| |||| | || | |||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||| | ||||||    
T  17167417 aacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactcttttctctcgcgctggtact 17167318  T
Q  185 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    ||   |||| ||||| ||| |||| |||||||| ||||||||||  | ||||||||||  ||||||||||    
T  17167317 tctggtgttgtagaa-tttctataagtgatttgggacccgttttccccatggaaaactactatttataca 17167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 19924112 - 19923956
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 184  Q
    ||||||||| |||| |||| |||| |||||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||| || ||| |    
T  19924112 aacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactcttttctctcgcgccagtaat 19924013  T
Q  185 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 241  Q
    || | |||  ||||| ||| |||| ||| |||||||||| ||||  ||||||||||||    
T  19924012 tcaagtgtggtagaa-tttctataagtggtttgcgacccattttccctatggaaaact 19923956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 24878356 - 24878489
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    |||||||||  |||| ||||||||| |||| |||| | || |||||||||||||||||| ||| ||||||||||||||||| |||   ||| ||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactctttt 24878455  T
Q  169 ctctcgctccggtacttcgaatgttttagaattt 202  Q
    |||||||  ||||| ||||| |||| ||||||||    
T  24878456 ctctcgcgtcggtaattcgagtgttgtagaattt 24878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 19926839 - 19926683
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 184  Q
    ||||||||| |||| |||| | || |||||||||||||||||| |||||||||||| ||||  |||||||| ||| ||| ||||||||||| || ||| |    
T  19926839 aacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactattttctctcgcgccagtaat 19926740  T
Q  185 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 241  Q
    || | |||  ||||| ||| |||| ||| |||||||||| ||||  ||||||||||||    
T  19926739 tcaagtgtggtagaa-tttctataagtggtttgcgacccattttccctatggaaaact 19926683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 17987482 - 17987619
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc-ctttacatacattctttatcactcttttctctcg-ctccggta 182  Q
    |||| |||||||||||||||| || |||||||||||||||||| | || |||||||  | |||||||||||| ||| |||| |||| || | |  |||||    
T  17987482 aactcaaaggaaaggtaaaatgcattgcattaaaaataaaggt-ggtctacaaatcagtctacatacattctgtataactcgtttccctagacgtcggta 17987580  T
Q  183 cttcgaatgttttagaattttgtataggtgatttgcgaccc 223  Q
     || || |||||||||||| ||||||  |||||||||||||    
T  17987581 gtttgagtgttttagaattctgtata--tgatttgcgaccc 17987619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 21165282 - 21165342
Alignment:
Q  194 ttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    |||||||| | |||||| |||||||||||||||||  |||||||||||| |||||||||||    
T  21165282 ttagaattctatataggcgatttgcgacccgttttccctatggaaaactattatttataca 21165342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  21 tggcgtctttcgacagaaaaaaggttttaaaa 52  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 25951260 - 25951292
Alignment:
Q  65 cattaagtttaaattgcaggaacttaaaggaaa 97  Q
    ||||||||||||||||||| |||||||||||||    
T  25951260 cattaagtttaaattgcagaaacttaaaggaaa 25951292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 24699275 - 24698999
Alignment:
Q  26 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 125  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  126 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt 225  Q
    || ||||||||||||||||| ||||||||||  | | ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgacccgt 24699078  T
Q  226 ttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 304  Q
    |||  |||||||||||| ||||||||||| ||| | ||||  | |||||||| |||| |||   ||||||||||||||||    
T  24699077 tttccctatggaaaactattatttatacatagaaaataac-ggaaaagaaactaatcacacgtccaacactccttccatg 24698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 15686859 - 15687148
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15686859 tgtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaa 15686958  T
Q  119 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaat-gttttagaattttgtataggtgatttg 217  Q
    ||||||||| || | | |||||| || |||||||||||||  |||||||||||||||  ||||||||||| |  ||||||||||  ||||||||||||||    
T  15686959 aataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttg 15687058  T
Q  218 cgacccgttt-ttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtag 307  Q
    |||| |||||   |||||||||||||||||||||||| ||| | |||| ||||||||||| |||||||| |||| ||||||||| ||||||    
T  15687059 cgactcgtttccactatggaaaactcttatttatacatagaaaataac-tggaaagaaactaatcccacgatcatcactccttctatgtag 15687148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 26010836 - 26011067
Alignment:
Q  25 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 121  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||| |||||||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  122 aaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 221  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgac 26011034  T
Q  222 ccgtttt-tctatggaaaactcttatttataca 253  Q
    | |||||  ||||||||||||  ||||||||||    
T  26011035 ctgttttccctatggaaaactactatttataca 26011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 13428914 - 13428700
Alignment:
Q  38 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 137  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| || |||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  138 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttt-ttctatgga 236  Q
    |||||||||||||||||||||| ||||||||||||| |  ||||||||||| ||||||||||  || |||||||||||||||||  ||||   |||||||    
T  13428814 atcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaa--ttatataggtgatttgcgacatgtttcccctatgga 13428717  T
Q  237 aaactcttatttataca 253  Q
    |||||  ||||||||||    
T  13428716 aaactactatttataca 13428700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 46 - 253
Target Start/End: Original strand, 4769742 - 4769949
Alignment:
Q  46 tttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttta 145  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||   ||||||||||||||| |||||||||| |||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  146 catacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactctta 245  Q
    |||||||||||||| |||||||||||| || | |||| ||||| |||||||||||| ||||||| ||||||| ||| | |||  ||||||||||||  ||    
T  4769842 catacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttgggacgcttttccctatggaaaactacta 4769941  T
Q  246 tttataca 253  Q
    ||||||||    
T  4769942 tttataca 4769949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 4765916 - 4765677
Alignment:
Q  21 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| |||||  |||||||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  119 aataaaggtagttcgacaaatcctttacatac----attctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgat 214  Q
    | ||||||| |||||||||||| |||||||||    ||||||||| ||||||||||||||| |  |||| || | |||||||||||  | ||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgat 4765717  T
Q  215 ttgcgacccgttttt-ctatggaaaactcttatttataca 253  Q
    ||||||||| ||||| ||||||||||||  ||||||||||    
T  4765716 ttgcgacccatttttcctatggaaaactactatttataca 4765677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 7148790 - 7148988
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| | | |||||||||| |||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtatag 7148889  T
Q  210 gtgatttgcgaccc-gtttttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |  ||||| ||||| ||||| ||||||||||||  |||||||||| ||  | ||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  7148890 gcaatttgtgacccggttttcctatggaaaactactatttatacataggaaataa-ttggaaagaaactaatcccacgatcaacactccttccatgtaga 7148988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 4832740 - 4832504
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 117  Q
    |||| |||||||||| |||||||||| |||| ||||||| || ||| ||||||||||||||||||  |||| ||||||||  ||||||||||||||||||    
T  4832740 tgtgacgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaa 4832641  T
Q  118 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 217  Q
    | |||||||| || |  || |||||||| ||| ||||||| | ||||||||||||| | ||  | |||||| |||||||||||| |||||||||||||||    
T  4832640 atataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttg 4832541  T
Q  218 cgacccgtttt-tctatggaaaactcttatttataca 253  Q
    ||| || ||||  ||||||||||||  ||||||||||    
T  4832540 cgatccattttccctatggaaaactactatttataca 4832504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 102 - 308
Target Start/End: Complemental strand, 9033622 - 9033415
Alignment:
Q  102 aaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtttt-agaa 199  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||  |||||||| || ||| |||||||| |||||| | ||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaa 9033523  T
Q  200 ttttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactcct 298  Q
    || |||||||| ||| ||||||||||||| |||||||||||| ||||||||||| |||| | |||  ||||||||||| |||| ||| |||||||||||     
T  9033522 ttctgtataggcgatatgcgacccgttttcctatggaaaactattatttatacataaga-aataa-gtggaaagaaactaatcacacgatcaacactccc 9033425  T
Q  299 tccatgtaga 308  Q
    ||||||||||    
T  9033424 tccatgtaga 9033415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 29614724 - 29614529
Alignment:
Q  113 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtt-ttagaattttgtataggt 211  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |   ||||||||||| |||| |||||||| | ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  212 gatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |||||||||||| ||||  |||||||||||| || |||||||| ||  | |||  || |||||||| ||||||||||||| |||||||||||||||||    
T  29614624 gatttgcgacccattttccctatggaaaactatt-tttatacataggaaataa-atgaaaagaaactaatcccacaatcagcactccttccatgtaga 29614529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 23378488 - 23378668
Alignment:
Q  75 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcga-caaatcctttacatacattctttatcactcttttctctc 173  Q
    |||||| || |||||||||||||| |||| | || |||||||||||||||||| |||| | ||||||||||||||||||| | ||| |||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttctctc 23378587  T
Q  174 gctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    || ||| |||||||| | ||||||||||||||||| |||||||| ||| | ||||  ||||| ||||||  ||||||||||    
T  23378588 gcgccgatacttcgagtattttagaattttgtataagtgatttgtgacacattttccctatgtaaaactactatttataca 23378668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 16243069 - 16242928
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||   |||||||||| |||||||||||  |||| ||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcctgtagag 16242970  T
Q  210 gtgatttgcgacccgtttt-tctatggaaaactcttatttat 250  Q
    |  |||| |||| ||||||  ||||||||||||  |||||||    
T  16242969 gaaatttacgactcgttttccctatggaaaactactatttat 16242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 27304547 - 27304424
Alignment:
Q  79 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctcc 178  Q
    ||||| ||||||||| |||  |||| | || ||||||||||||||| || ||| ||||||| || |||||||||| | ||| | ||||||||||||  ||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagcc 27304448  T
Q  179 ggtacttcgaatgttttagaattt 202  Q
    | ||||| || |||| ||||||||    
T  27304447 gatactttgagtgttgtagaattt 27304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 13409834 - 13409876
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 127  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  13409834 aacttaaaggaaaggtaaaatgcattgcattaaaaataaaggt 13409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  79 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 153  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  79 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 153  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 8e-78; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 22397777 - 22397545
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaa-ggaaaggtaaaatacaatgcattaa 117  Q
    ||||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22397777 tgtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaa 22397680  T
Q  118 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtgattt 216  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || |||||||||| ||||||||||||||    
T  22397679 aaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgattt 22397580  T
Q  217 gcgacccgtttt-tctatggaaaactcttatttat 250  Q
    ||||||||||||  ||| |||||||||||||||||    
T  22397579 gcgacccgttttccctacggaaaactcttatttat 22397545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 16177304 - 16177502
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 209  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||||      |||||||||| ||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtatag 16177403  T
Q  210 gtgatttgcgacccgtttttc-tatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    || |||||||||||||||| | |||||||||||  |||||||||| ||| | |||  ||||||||||| ||||||||||||| |||||||||||||||||    
T  16177404 gttatttgcgacccgttttccatatggaaaactaatatttatacatagaaaataa-gtggaaagaaactaatcccacaatcagcactccttccatgtaga 16177502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 17524797 - 17524998
Alignment:
Q  28 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 125  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| || ||||||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  126 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt 225  Q
    || || |||||| ||||||| ||||||||||||| ||||||||||||| | || | ||||||| |||||||||||| |||||||||||||||||||| ||    
T  17524897 gttgtccgacaa-tcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgacctgt 17524995  T
Q  226 ttt 228  Q
    |||    
T  17524996 ttt 17524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 1177349 - 1177150
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacat----tctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgt 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||    ||||||| ||||||||||||||| |  ||||||||| |||||||||||| |||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgt 1177250  T
Q  206 ataggtgatttgcgacccgtttttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgt 305  Q
    |||| ||||||||| || ||||| ||||| ||||||  |||||||||| ||  | |||  || |||||||| |||| ||  ||||||||||| |||||||    
T  1177249 atagatgatttgcgtcctgttttcctatgcaaaactactatttatacataggaaataa-atgaaaagaaactaatctcatgatcaacactccctccatgt 1177151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 114 - 308
Target Start/End: Original strand, 15830026 - 15830220
Alignment:
Q  114 ttaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtga 213  Q
    ||||||||||| ||  ||||||||||| |||||||||||| ||||| ||||||||||||| | | | ||||| || |||||||||||| |||||||| ||    
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttagaattctgtataggcga 15830125  T
Q  214 tttgcgacccgtttttc-tatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    ||||||||||||||| | |||| |||||| ||||||||||| ||| | |||  ||||||||||| ||||||| ||| | ||||| |||||||||||    
T  15830126 tttgcgacccgttttccttatgcaaaactattatttatacatagaaaataa-gtggaaagaaactaatcccataattagcactctttccatgtaga 15830220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 17948007 - 17947842
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 184  Q
    |||||||||||||| |||| | || || ||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||| |||| || ||| ||||    
T  17948007 aacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactctttcctcttgcgccgttact 17947908  T
Q  185 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 250  Q
    ||||||||| ||||| ||| |||| |||||||  ||||| ||||  ||||||||||||  |||||||    
T  17947907 tcgaatgttgtagaa-tttctataagtgatttttgacccattttccctatggaaaactaatatttat 17947842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 14763090 - 14762938
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||| |||| |||| | || |||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactctttt 14762991  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacc 222  Q
    ||||||   | ||||||||| || | ||||| ||| |||| |||||||||||||    
T  14762990 ctctcgtgtcagtacttcgagtgatgtagaa-tttctataagtgatttgcgacc 14762938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 18713709 - 18713842
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 18713808  T
Q  169 ctctcgctccggtacttcgaatgttttagaattt 202  Q
    ||||||   |||||||| || |||| ||||||||    
T  18713809 ctctcgtgacggtactttgagtgttatagaattt 18713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 308
Target Start/End: Complemental strand, 31126351 - 31126082
Alignment:
Q  59 ttaaggcattaagttt-aaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatac 150  Q
    |||| ||||||||||| ||||||||| |||| |||| ||||  |||||||||       ||||||| |||||||||| ||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  151 attct------------ttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaa 237  Q
    ||| |            |||| |||||||||||| ||   | |||||||| ||||||||||||   |||||| |||||| ||||||||||  ||| ||||    
T  31126251 attttaaaatatgagatttatgactcttttctcttgcgttgttacttcgagtgttttagaattccatataggagatttgagacccgttttccctaaggaa 31126152  T
Q  238 aactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |||| ||||||||||| ||  | |||  ||||||||||| |||||||  || | |||||||||||||||||    
T  31126151 aactattatttatacataggaaataa-gtggaaagaaactaatcccaagattagcactccttccatgtaga 31126082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 25945847 - 25945889
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 127  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  25945847 aacttaaaggagaggtaaaatgcattgcattaaaaataaaggt 25945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 28712360 - 28712461
Alignment:
Q  71 gtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttc 169  Q
    |||||||  |||| ||||||||| ||||||||| |||| ||||||||   ||||||| ||||||||||||   ||||||||||| | ||| |||||||||    
T  28712360 gtttaaaacgcagaaacttaaagaaaaggtaaattacattgcattaatg-taaaggtggttcgacaaatcagattacatacattatatatgactcttttc 28712458  T
Q  170 tct 172  Q
    |||    
T  28712459 tct 28712461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 13002906 - 13002854
Alignment:
Q  121 taaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctct 172  Q
    ||||||| ||||||||||||  |||||||||||||| ||| ||||||||||||    
T  13002906 taaaggtggttcgacaaatcagtttacatacattctgtatgactcttttctct 13002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 11361595 - 11361866
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  11361595 tgtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaa 11361694  T
Q  119 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 218  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||  |||||  |||| |||||||||||| |||||||||||| | |    
T  11361695 aataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgatctac 11361794  T
Q  219 gacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatca 290  Q
    |||| |||||  ||| |||||||||||||||||||| ||| | |  | ||||||||||| |||||||| ||||    
T  11361795 gacctgttttccctacggaaaactcttatttatacatagaaaat-gcatggaaagaaactaatcccacgatca 11361866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 26 - 308
Target Start/End: Complemental strand, 9409370 - 9409083
Alignment:
Q  26 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 124  Q
    |||| ||||||||||  |||||||||| ||||||| || | |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  125 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 224  Q
    ||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||| |||||||||||| | |||| |||||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgacccg 9409171  T
Q  225 ttt-ttctatggaaaactcttatttataca-aagatactaacttggaaagaaac---gaatcccacaatcaacactccttccatgtaga 308  Q
    |||   ||||||||||||  |||||||||| | || | |||| |||||| ||||    |||||||| ||||||||| ||||||||||||    
T  9409170 tttcccctatggaaaactactatttatacataggaaaataac-tggaaaaaaacaaataatcccacgatcaacacttcttccatgtaga 9409083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 16675086 - 16675269
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 167  Q
    ||||||||| ||||| ||| ||||| ||||||||| |  | |||||| |||||||| || |||||||||||| ||| ||||||||||| ||| ||||| |    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctct 16675185  T
Q  168 tctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttata 251  Q
    |||||||| |||||||||||| |||||||||| | | |||| | |||||| |||||||||||| |||||||||||  ||||||||    
T  16675186 tctctcgcaccggtacttcgagtgttttagaa-tatctataagggatttgtgacccgtttttcatatggaaaactactatttata 16675269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 5358040 - 5358102
Alignment:
Q  110 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctct 172  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 8140832 - 8140930
Alignment:
Q  152 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttat 250  Q
    |||| ||| ||||||| ||||||| |||||||||| | |||||||||||||| |||| |||||||| ||||  |||| | |||||||||||  |||||||    
T  8140832 ttctatataactctttactctcgcgccggtacttcaagtgttttagaatttt-tataagtgatttgtgaccaattttccatatggaaaactactatttat 8140930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 253
Target Start/End: Original strand, 4697470 - 4697638
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 183  Q
    ||||||||| ||||||||| |  | |||||||||  ||||||| ||||||| ||||   ||||||||||| | ||| ||| | ||||||| | ||||| |    
T  4697470 aacttaaagaaaaggtaaattgtattgcattaaag-taaaggtggttcgacgaatcagattacatacattttgtataactttgttctctcacgccggtgc 4697568  T
Q  184 ttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttataca 253  Q
    || || |||||||||| ||| |||| |||||||||||| | |||| | |||||||||||  ||||||||||    
T  4697569 tttgagtgttttagaa-tttctataagtgatttgcgactcattttccatatggaaaactactatttataca 4697638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 18558515 - 18558473
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 127  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  18558515 aacttaaaggaaatgtaaaatgcattgcattaaaaataaaggt 18558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 64 - 308
Target Start/End: Original strand, 20146169 - 20146420
Alignment:
Q  64 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 156  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||       |||||||||||||||| | || | | ||||||||||||||||| |||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat-ctt 20146267  T
Q  157 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttatacaaa 255  Q
    ||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||    
T  20146268 tatgactcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgacccattttccatatggaaaactcttatttatacaaa 20146367  T
Q  256 gatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |  | |||||||||||||||| | |||||| |||||||||||||| |||||||    
T  20146368 gcaaataacttggaaagaaactagtcccacgatcaacactccttctatgtaga 20146420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 45 - 253
Target Start/End: Complemental strand, 11014027 - 11013817
Alignment:
Q  45 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctt 143  Q
    ||||||||||||||| ||||||||||||||||| || | | |||||||||||||  |||| ||||||||||||||||||||||| | |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  144 tacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactc 242  Q
    |||||| ||||||||| |||||||||||||   | |||| ||||| ||||||| ||||||||||||||||||||| |||| ||||  |||||||||||||    
T  11013927 tacatatattctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgcaacccattttacctatggaaaactc 11013828  T
Q  243 ttatttataca 253  Q
     ||| ||||||    
T  11013827 ctatatataca 11013817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 33103021 - 33103201
Alignment:
Q  75 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcg 174  Q
    ||||||||| |||||||||||||| |||| | || ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||     
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctctca 33103120  T
Q  175 ctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt--tctatggaaaactcttatttataca 253  Q
    |  ||||||||||| |||||||||||| |||||||||||||||||||| |||||   ||||||||||||  ||||||||||    
T  33103121 cgtcggtacttcgagtgttttagaattatgtataggtgatttgcgacctgttttcccctatggaaaactactatttataca 33103201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 36571826 - 36571655
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||| |||| | || | || |||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactctttt 36571728  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 241  Q
    ||||||  |  ||||||||| |||| ||||| ||| |||| |||||||||||||| ||||| ||||||||||||    
T  36571727 ctctcgtgctagtacttcgagtgttgtagaa-tttctataagtgatttgcgacccatttttcctatggaaaact 36571655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 22608003 - 22607834
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||||||||| || ||||||||||| |||| |||| |||||||||||||||||| ||||  || |||||||||||||||| ||||| ||||||||    
T  22608003 aagttaaaattgcag-aatttaaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactctttt 22607905  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttt-ttctatggaaaa 239  Q
    |||| ||  ||||||||||| |||| |||||  ||  ||| ||||||||||||||||||  |||||||||||    
T  22607904 ctcttgcgacggtacttcgattgttatagaa-attccataagtgatttgcgacccgtttcctctatggaaaa 22607834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 253
Target Start/End: Complemental strand, 20150588 - 20150422
Alignment:
Q  88 ttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcg 187  Q
    |||||| |||| |||| || | || ||||||||||||||| ||| |||||||||||| ||| |||| | ||| ||| |||||||||||  ||||||||||    
T  20150588 ttaaagaaaagataaattatattgtattaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcg 20150489  T
Q  188 aatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    | |||| ||||||| ||||||||||||||| ||||||||||  |||||||||||   ||||||||||    
T  20150488 agtgttgtagaattatgtataggtgatttgagacccgttttccctatggaaaacaactatttataca 20150422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 253
Target Start/End: Complemental strand, 13202192 - 13202052
Alignment:
Q  113 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtg 212  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||| |||||| ||||| |||| ||||| ||| |||| |||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaa-tttctataagtg 13202094  T
Q  213 atttgcgacccgttttt-ctatggaaaactcttatttataca 253  Q
    |||||||||  |||||| ||||| ||||||  ||||||||||    
T  13202093 atttgcgacatgtttttcctatgaaaaactactatttataca 13202052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 17615274 - 17615439
Alignment:
Q  85 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 184  Q
    ||||||||| |||||| || | || |||||| ||||||||||| ||||||||||||||||||||||||| | | | |||||||| |||| | || |||||    
T  17615274 aacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgtact 17615373  T
Q  185 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 250  Q
    |||| |||| ||||| ||| |||| |||||| | ||||||||||  ||||||||||||  |||||||    
T  17615374 tcgagtgttgtagaa-tttctataagtgattcgtgacccgttttccctatggaaaactactatttat 17615439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 22620153 - 22620063
Alignment:
Q  112 cattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 202  Q
    |||||||||||||||| |||||||||||| |||||||||  | |  || ||| ||||||||||||| |||||||||| |||| ||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatacggtttgaataactattttctctcgctctggtacttcgagtgttgtagaattt 22620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 13232801 - 13232737
Alignment:
Q  190 tgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 253  Q
    |||||||||||| || ||||||||||||||| |||||||  |||||||||||| |||||||||||    
T  13232801 tgttttagaattatgcataggtgatttgcgatccgttttccctatggaaaactattatttataca 13232737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc 141  Q
    ||||| ||||||||| ||||||||| |||| |||| |    |||||||||||||||||| |||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 20886571 - 20886607
Alignment:
Q  91 aaggaaaggtaaaatacaatgcattaaaaataaaggt 127  Q
    ||||||||||||||| || ||||||||||||||||||    
T  20886571 aaggaaaggtaaaatgcattgcattaaaaataaaggt 20886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 64 - 308
Target Start/End: Complemental strand, 5851 - 5599
Alignment:
Q  64 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 156  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||      ||| |||||||||||||||||| || |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  157 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaa 255  Q
    ||| |||||||| |||||   ||||||||| |  ||||||||||| |||||||||||||| |||||||||||  |||| |||||||||||||||||||||    
T  5751 tatgactcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgacccgttttccctatagaaaactcttatttatacaaa 5652  T
Q  256 gatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 308  Q
    |  | |||||||||| ||||| |||||||| ||||||||||||||||| ||||    
T  5651 gcaaataacttggaatgaaactaatcccacgatcaacactccttccatataga 5599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 20793 - 21077
Alignment:
Q  19 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 118  Q
    |||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||| ||||||||||||||  ||||| ||||||||| ||    
T  20793 tgtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaa 20891  T
Q  119 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 218  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||     ||||||| | |||||||||||| | |||| |||||||||    
T  20892 aataaaggtggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattat-tatacgtgatttgc 20990  T
Q  219 gacccgtt-tttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgt 305  Q
    ||||| || |  |||||||| |||  |||||||||| ||  | |||  ||||||||||| |||||||| |||||||||||||||||||    
T  20991 gacccattgtccctatggaagactactatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatgt 21077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 12991 - 13151
Alignment:
Q  141 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 239  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 13090  T
Q  240 ctcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttcc 301  Q
    ||  |||||||||| ||| | |||   | |||||||| |||||||| |||||||||||||||    
T  13091 ctactatttatacatagaaaataa-gagtaaagaaactaatcccacgatcaacactccttcc 13151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 17221 - 17392
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 17320  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 241  Q
    ||||||| ||||||| |||| |||| || || ||| |||| |||||||| ||||||||||  ||||||||||||    
T  17321 ctctcgcgccggtac-tcgagtgttgtacaa-tttctataagtgatttgtgacccgttttccctatggaaaact 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 4546 - 4703
Alignment:
Q  69 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 168  Q
    ||||| ||| ||||| ||||||||| ||   |||| | || ||| |||||||||||||| |||| ||||||| |||| || |||||| ||| ||||||||    
T  4546 aagttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactctttt 4645  T
Q  169 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 228  Q
    ||||||| ||||||| || | |||| ||||| ||| |||| |||||||| ||||||||||    
T  4646 ctctcgcgccggtac-tcaagtgttgtagaa-tttctataagtgatttgtgacccgtttt 4703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 374275 - 374113
Alignment:
Q  89 taaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcga 188  Q
    |||||||||| |||| | || |||||||||||||||||| ||||||||||| ||||||||||||| | ||| ||||||||||||||| || |||||| ||    
T  374275 taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actcttttctctcgcgcctgtactttga 374177  T
Q  189 atgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca 253  Q
     |||| ||| | ||| |||| |||||||||||||  |||  ||||||||||||  ||||||||||    
T  374176 gtgttgtagca-tttctataagtgatttgcgaccgttttccctatggaaaactactatttataca 374113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 20572 - 20725
Alignment:
Q  100 taaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttaga 198  Q
    |||| |||| |||||||||| ||||||| ||| |||||||  ||| ||||||||| | ||| ||||||||||||||| |||||||||||| |||||||||    
T  20572 taaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgttttaga 20670  T
Q  199 attttgtataggtgatttgcgacccgt-ttttctatggaaaactcttatttataca 253  Q
    |  || | || |||||||||||||||| ||  |||||||||||| |||||||||||    
T  20671 a-gttctgtaagtgatttgcgacccgtcttgcctatggaaaactattatttataca 20725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 996 - 859
Alignment:
Q  117 aaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatt 215  Q
    ||||||||||| |||| ||||||| ||| ||||||||| | ||| |||||| | |||||| |||||||||||| |||||| ||| ||| |||| ||||||    
T  996 aaaataaaggttgttcaacaaatcattttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaa-tttctataagtgatt 898  T
Q  216 tgcgacccgtttttc-tatggaaaactcttatttataca 253  Q
    ||| ||||||||| | |||||||||||  ||||||||||    
T  897 tgcaacccgttttccgtatggaaaactactatttataca 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 6035 - 5989
Alignment:
Q  261 taacttggaaagaaacgaatcccacaatcaacactccttccatgtag 307  Q
    |||||||||||||||| |||||||| |||| ||||| ||||||||||    
T  6035 taacttggaaagaaactaatcccacgatcagcactcgttccatgtag 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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