View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_8 (Length: 420)
Name: NF18138_low_8
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 38633449 - 38633049
Alignment:
| Q |
18 |
agcacatacacgacacaaaacacgacgtcgacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttattaatccacccaatatgt |
117 |
Q |
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| T |
38633449 |
agcacagacacgacacaaaacacgacatcaacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttattaatccacccaatatgt |
38633350 |
T |
|
| Q |
118 |
cttcactaatttaattaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagatgctt |
217 |
Q |
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| T |
38633349 |
cttcactaattta-ttaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagatgctt |
38633251 |
T |
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| Q |
218 |
aaggtccaaggtttgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgagagatttaatatgcgca |
317 |
Q |
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| T |
38633250 |
aaggtccaaggttcgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgagagatttaatatgtgca |
38633151 |
T |
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| Q |
318 |
gttgtgcatagaggatatccgattcac------nnnnnnnnnntacaatcacactcggtacttttcagtttatgttctgttactcattttctggttcctt |
411 |
Q |
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| T |
38633150 |
gttgtgcatagaggatatccgattcacaaaaaaaaaaaaaaaatacaatcacactcggtacttttcagtttatgttctgttactcattttctggttcctt |
38633051 |
T |
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| Q |
412 |
tg |
413 |
Q |
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| T |
38633050 |
tg |
38633049 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 35203054 - 35202996
Alignment:
| Q |
106 |
cacccaatatgtcttcactaatttaattaactcttaagtaaacagttatctacaacttta |
165 |
Q |
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| T |
35203054 |
cacccaatatgtcttcattaacttaattaactcttaa-ttaacagttatatacaccttta |
35202996 |
T |
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