View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_low_9 (Length: 391)
Name: NF18138_low_9
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 28381146 - 28381501
Alignment:
| Q |
19 |
gctatgccattagtagtaattgtaatttcctatgtaaagcttgggtatggctcatctaannnnnnnnnccttgtgtatgtcgctcatctaaatctaaatt |
118 |
Q |
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| T |
28381146 |
gctatgccattagtagtaattgtaatttcctatgtaaagcttgggtatggctcatctaatttttttttccttgtgtatgtcgctcatctaaatctaaatt |
28381245 |
T |
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| Q |
119 |
aaatacatagtaaaatgaattaaccaagagttgatattttacacgactgggtgattgtaatgcatatacatcaaccattaatttgataatttatcaatag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28381246 |
aaatacatagtaaaatgaattaaccaagagttgatattttacacgactgttttattgtaatgcatatacatcaaccattaatttgataatttatcaatag |
28381345 |
T |
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| Q |
219 |
ttaatgtgatttattttactttctaaagtggggtggctgatatataaataattaaatgcttactttttatgttcacaaagaacttttgtaactcatttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28381346 |
ttaatgtgatttattttactttctaaagtggggtggctgatatataaataattaaatgcttactttttatgttcacaaagaacttttgtaacatatttct |
28381445 |
T |
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| Q |
319 |
taatttaaccatgaactatgccttttttcttgccttattttacaatactcatgaca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28381446 |
taatttaaccatgaactatgccttttttcttgccttattttacaatactcatgaca |
28381501 |
T |
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