View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18139_low_1 (Length: 729)
Name: NF18139_low_1
Description: NF18139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18139_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 4 - 714
Target Start/End: Complemental strand, 43560420 - 43559710
Alignment:
| Q |
4 |
atgagtttgactaaattatcacagtcctgtaatatagctttaacaaaaattacaaggactccctgtgattttgtcaaattcactgtgaatccaaacatat |
103 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560420 |
atgagtttgactaaattatcatagtcctgtaatatagctttaacaaaaattacgaggactccctgtgattttgtcaaattcactgtgaatccaaacatat |
43560321 |
T |
|
| Q |
104 |
ttcttccgttacgaaatgaatttcnnnnnnngaacattacaggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttc |
203 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560320 |
ttcttctgttacgaaatgaatttctttttttgaacattacaggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttc |
43560221 |
T |
|
| Q |
204 |
tggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctcttacagaagcatatcttaaggaagagaacaaaatca |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560220 |
tggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctcttacagaagcatatcttaaggaagagaacaaaatca |
43560121 |
T |
|
| Q |
304 |
cagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaac |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43560120 |
cagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataactgattcgagttactatgatgataatggcttaac |
43560021 |
T |
|
| Q |
404 |
agaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatcac |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43560020 |
agaagcttcaagagaaattttcaccagcaagcaagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatcac |
43559921 |
T |
|
| Q |
504 |
acaagtcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtgt |
603 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559920 |
acaactcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtgt |
43559821 |
T |
|
| Q |
604 |
ccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaatat |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559820 |
ccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaatat |
43559721 |
T |
|
| Q |
704 |
gagtactattt |
714 |
Q |
| |
|
||||||||||| |
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|
| T |
43559720 |
gagtactattt |
43559710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 306 - 714
Target Start/End: Complemental strand, 1992697 - 1992289
Alignment:
| Q |
306 |
gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag |
405 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1992697 |
gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag |
1992598 |
T |
|
| Q |
406 |
aagcttcaagagaaattttcaccagca---agcaagcattggaccctttgttctgctatgatttccaatctggttataacttacctatgagtaattatca |
502 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
1992597 |
aagcttcaagagaaattttcaccaataaacaacaagcattagaccctttgttctgctatgatttccaatc---ttataacttacctatgactaattatca |
1992501 |
T |
|
| Q |
503 |
cacaagtcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtctaacaaattcagatcacgcgaatgtg |
602 |
Q |
| |
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| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1992500 |
cgcaagccttaaaccatgtgattagagtcaattcggacttaattcaagctatggattcacttcaatgccgagtctaacaaattcggatcacgcgaatgtg |
1992401 |
T |
|
| Q |
603 |
tccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaagcaatagctcaaata |
702 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
1992400 |
tttgtgacagagttttcatacaacaattcagcttcaaaattcagctcattgttcattaatgatcaagggaaagaaagcaattcatgcaatagctcaaata |
1992301 |
T |
|
| Q |
703 |
tgagtactattt |
714 |
Q |
| |
|
|||||||||||| |
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|
| T |
1992300 |
tgagtactattt |
1992289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 588 - 714
Target Start/End: Complemental strand, 44613852 - 44613726
Alignment:
| Q |
588 |
gatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaa |
687 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||||||||||||| |
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| T |
44613852 |
gatcacgcgaatgtgtttgtgacagagttttcatacaacaattcagcttcaaaattcagctcattgttcattaatgatcaagggaaagaaagcaattcat |
44613753 |
T |
|
| Q |
688 |
gcaatagctcaaatatgagtactattt |
714 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
44613752 |
gcaatagctcaaatatgagtactattt |
44613726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 34626516 - 34626408
Alignment:
| Q |
143 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg |
242 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |||| |||||||| || | || |||||| |
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| T |
34626516 |
caggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg |
34626417 |
T |
|
| Q |
243 |
attgatcca |
251 |
Q |
| |
|
||||||||| |
|
|
| T |
34626416 |
attgatcca |
34626408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 51044664 - 51044772
Alignment:
| Q |
143 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg |
242 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||||| |||| |||||||| || | || |||||| |
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|
| T |
51044664 |
caggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg |
51044763 |
T |
|
| Q |
243 |
attgatcca |
251 |
Q |
| |
|
||||||||| |
|
|
| T |
51044764 |
attgatcca |
51044772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 41830848 - 41830788
Alignment:
| Q |
151 |
ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc |
211 |
Q |
| |
|
||||||||||||||| |||||| || ||||| || |||||||| |||||||| |||||||| |
|
|
| T |
41830848 |
ctcaaatagcagcacgattaccgggaagaaccgacaatgaaataaaaaacttttggaattc |
41830788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 34358271 - 34358305
Alignment:
| Q |
156 |
atagcagcacaattaccagggagaacagataatga |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
34358271 |
atagcagcacaattaccaggaagaacagataatga |
34358305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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