View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18139_low_2 (Length: 585)
Name: NF18139_low_2
Description: NF18139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18139_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 31 - 570
Target Start/End: Complemental strand, 35035687 - 35035139
Alignment:
| Q |
31 |
aaaactcaagggcatcaaactaaccagctatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccat |
130 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035687 |
aaaactctagggcatcaaactaaccagctatagtaggtaaaaatggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccat |
35035588 |
T |
|
| Q |
131 |
acaaatta----ttataggaaaagacaaaagtctatacaaattattatnnnnnnnnnnnnnn-gacatttaaataaacacatgatagccacataaagtgt |
225 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35035587 |
acaaattaattattataggaaaagacaaaagtctatacaaattattataaaaataaataaaaagacatttaaataaacacatgatagccacataaagtgt |
35035488 |
T |
|
| Q |
226 |
agcattacccacacggaaattattctttaaatacacac----tcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035487 |
agcattacccacacggaaattattctttaaatacacacacactcttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttata |
35035388 |
T |
|
| Q |
322 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
421 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
35035387 |
tgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcct |
35035288 |
T |
|
| Q |
422 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035287 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
35035188 |
T |
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| Q |
522 |
tcacctaaaaacttagatttgttcttcacatccgtttcagccaccacag |
570 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35035187 |
tcacctaaaaacttagatttgttcttcacatccgtttcatccaccacag |
35035139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 322 - 570
Target Start/End: Complemental strand, 34974660 - 34974415
Alignment:
| Q |
322 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
421 |
Q |
| |
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|||||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
|
| Q |
422 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
521 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||||| ||| |||| ||| || |||||||||||||||| |||||| |||||| | ||| |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa-- |
34974463 |
T |
|
| Q |
522 |
tcacctaaaaacttagatttgttcttcacatccgtttcagccaccacag |
570 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
34974462 |
-cacctaaaaatttagatttgttcttcacatccatttcagccaccacag |
34974415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 401 - 570
Target Start/End: Complemental strand, 34956119 - 34955953
Alignment:
| Q |
401 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
500 |
Q |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
34956020 |
T |
|
| Q |
501 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcagccaccacag |
570 |
Q |
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||||| || ||| ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
34956019 |
ctaaaacccttaggtcaaa---cacaaaaaaatttagatttgttcttcacatccgtttcatccaccacag |
34955953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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