View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18139_low_4 (Length: 449)

Name: NF18139_low_4
Description: NF18139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18139_low_4
NF18139_low_4
[»] chr1 (4 HSPs)
chr1 (16-435)||(31522313-31522760)
chr1 (309-419)||(8967971-8968081)
chr1 (280-400)||(9195136-9195256)
chr1 (280-395)||(8965950-8966066)
[»] chr7 (10 HSPs)
chr7 (306-419)||(1785564-1785676)
chr7 (280-332)||(11001088-11001140)
chr7 (348-419)||(18790357-18790429)
chr7 (203-261)||(1785741-1785799)
chr7 (281-330)||(4303181-4303230)
chr7 (196-261)||(18987431-18987496)
chr7 (196-261)||(19002058-19002123)
chr7 (344-430)||(9576522-9576609)
chr7 (344-430)||(9583948-9584035)
chr7 (284-332)||(8915435-8915483)
[»] scaffold0236 (1 HSPs)
scaffold0236 (309-416)||(16213-16322)
[»] chr4 (5 HSPs)
chr4 (345-419)||(53477379-53477454)
chr4 (307-419)||(26974822-26974935)
chr4 (347-400)||(54700756-54700809)
chr4 (280-390)||(10494695-10494806)
chr4 (280-320)||(13085420-13085460)
[»] chr3 (1 HSPs)
chr3 (278-323)||(8536654-8536699)
[»] chr8 (4 HSPs)
chr8 (281-430)||(2688943-2689082)
chr8 (331-411)||(25479603-25479682)
chr8 (280-330)||(22922166-22922216)
chr8 (344-400)||(30440575-30440632)
[»] chr5 (2 HSPs)
chr5 (307-392)||(9868576-9868662)
chr5 (284-332)||(18252195-18252243)
[»] chr2 (4 HSPs)
chr2 (281-330)||(31636059-31636108)
chr2 (280-332)||(33053191-33053243)
chr2 (280-327)||(27952644-27952691)
chr2 (280-330)||(2165647-2165697)
[»] chr6 (4 HSPs)
chr6 (280-323)||(18203207-18203250)
chr6 (280-330)||(3541970-3542020)
chr6 (280-330)||(30049640-30049690)
chr6 (280-330)||(30051927-30051977)
[»] scaffold0110 (1 HSPs)
scaffold0110 (280-330)||(45932-45982)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 31522313 - 31522760
Alignment:
Q  16 atcaaaatacacaaaacttagttaaataatgattgaaatcattttaccttcatttactgcaacaaaaaacaatatttttaatatatttttt--------- 106  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  31522313 atcaaaatacacaaaacttagttaaat---gattgaaatcattttaccttcatttactgcaacaaaaaacaatatttttaatatatttttttgtgatata 31522409  T
Q  107 -gtaacatatttcttaatatgtcctacaaaaatgtcatttaaatttaaagtgtcaattccagaataagtagagatcctaggaaattttccgatgagcaat 205  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31522410 tgtaacatatttcttaatatgtcctacaaaaatgtcatttaaatttaaagtgtcaattccagaataagtagagatcctaggaaattttccgatgggcaat 31522509  T
Q  206 gttgttgataaacgctagagagttaaaattttcaatgtagcaaccatctatgaata-----------aagctcattat-agaacg---------agtcga 284  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||           ||||||||||| ||||||         ||||||    
T  31522510 gttgttgataaacgttagagagttaaaattttcaatgtagcaaccatctatgaatatcttgcagatgaagctcattatcagaacgagaactcgaagtcga 31522609  T
Q  285 gttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttttgttttggatttt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  31522610 gttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatactttctattttatttttgttttggatttt 31522709  T
Q  385 cggcccattagagtttgcttagtatttaaacacttaattgtagccacaggt 435  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  31522710 cggcatattagagtttgcttagtatttaaacacttaattgtagccacaggt 31522760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 419
Target Start/End: Complemental strand, 8968081 - 8967971
Alignment:
Q  309 atgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttat-ttttgttttggattttcggcccattagagtttgcttagt 407  Q
    ||||||||||||||| |||||||||| ||||||  |||||||||||| || |  |||||| || |||||||||||||||| |||||||||||| ||| ||    
T  8968081 atgtaggagggtttctttagtattattatttcagcccaattttaataattttcattttatgttatgttttggattttcgg-ccattagagtttccttggt 8967983  T
Q  408 atttaaacactt 419  Q
    ||||||| ||||    
T  8967982 atttaaatactt 8967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 400
Target Start/End: Complemental strand, 9195256 - 9195136
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttt-tgttttg 378  Q
    ||||||||||| ||||||||  |||||||| ||| |||||||||  ||||||| | |||| |  | |||||||||| || |||||||||||| | ||| |    
T  9195256 gtcgagttctttagaggtggt-ggggctgacgtatgagggtttccatagtatttttattttagcctaattttaataatttttgttttattttctttttcg 9195158  T
Q  379 gattttcggcccattagagttt 400  Q
    || ||| |||||||||||||||    
T  9195157 gaattttggcccattagagttt 9195136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 8966066 - 8965950
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttt-tgttttg 378  Q
    ||||||||||||||||||||| | | ||||||||||| |||||    |||||||| ||  ||  ||||||||| || ||  ||||||||||| |||||||    
T  8966066 gtcgagttcttcagaggtggaggagactgatgtaggaaggttttcggagtattattatcgcatcccaattttattaatttctgttttattttctgttttg 8965967  T
Q  379 gattttcggcccattag 395  Q
    ||||||| |||| ||||    
T  8965966 gattttccgccctttag 8965950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 1785676 - 1785564
Alignment:
Q  306 ctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgctt 404  Q
    |||||||| ||||||||| |||||||||| ||||||  | |||||||||| ||  | ||||||||| | ||||| |||||||||| ||||||||||  ||    
T  1785676 ctgatgtatgagggtttctttagtattattatttcagcctaattttaataatt--tattttattttctattttgaattttcggccaattagagtttcttt 1785579  T
Q  405 agtatttaaacactt 419  Q
    |||||||||||||||    
T  1785578 agtatttaaacactt 1785564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 11001140 - 11001088
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtatt 332  Q
    ||||||||||||||||||||| | | |||||||||||||||||| ||||||||    
T  11001140 gtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagtatt 11001088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 18790429 - 18790357
Alignment:
Q  348 ttttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgcttagtatttaaacactt 419  Q
    |||||||| || |||||||||||| ||||||||||||||||  |||||| ||||  |||||||||||||||||    
T  18790429 ttttaataatttttgttttattttctgttttggattttcggttcattagggtttctttagtatttaaacactt 18790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 1785799 - 1785741
Alignment:
Q  203 aatgttgttgataaacgctagagagttaaaattttcaatgtagcaaccatctatgaata 261  Q
    ||||||||||||||||||  |||||||||| || ||||||| |||| ||||||||||||    
T  1785799 aatgttgttgataaacgccggagagttaaatttgtcaatgtggcaaacatctatgaata 1785741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 4303181 - 4303230
Alignment:
Q  281 tcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    |||||||||||||||||||| | | ||||||||||||||||| |||||||    
T  4303181 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagta 4303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 18987431 - 18987496
Alignment:
Q  196 gatgagcaatgttgttgataaacgctagagagttaaaattttcaatgtagcaaccatctatgaata 261  Q
    ||||| |||||||||||||||| | | |||||||||||||| |||||| |||  ||||||||||||    
T  18987431 gatgaacaatgttgttgataaatgtttgagagttaaaatttacaatgtggcagacatctatgaata 18987496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 19002058 - 19002123
Alignment:
Q  196 gatgagcaatgttgttgataaacgctagagagttaaaattttcaatgtagcaaccatctatgaata 261  Q
    ||||| |||||||||||||||| | | |||||||||||||| |||||| |||  ||||||||||||    
T  19002058 gatgaacaatgttgttgataaatgtttgagagttaaaatttacaatgtggcagacatctatgaata 19002123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 9576522 - 9576609
Alignment:
Q  344 ccaattttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgcttagtatttaaacacttaa-ttgtagcca 430  Q
    |||||||||||| || |||||||||||| |||| |||||||| | |||||||| | || |||||| ||||||||||||| |||||||||    
T  9576522 ccaattttaataatttttgttttattttatgttatggatttttgacccattag-ggttccttagtttttaaacacttaagttgtagcca 9576609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 9583948 - 9584035
Alignment:
Q  344 ccaattttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgcttagtatttaaacacttaa-ttgtagcca 430  Q
    |||||||||||| || |||||||||||| |||| |||||||| | |||||||| | || |||||| ||||||||||||| |||||||||    
T  9583948 ccaattttaataatttttgttttattttatgttatggatttttgacccattag-ggttccttagtttttaaacacttaagttgtagcca 9584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 8915483 - 8915435
Alignment:
Q  284 agttcttcagaggtggaaggggctgatgtaggagggtttcattagtatt 332  Q
    |||||||||||| |||| | | |||||||||||||||||| ||||||||    
T  8915483 agttcttcagagatggaggagactgatgtaggagggtttccttagtatt 8915435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 416
Target Start/End: Original strand, 16213 - 16322
Alignment:
Q  309 atgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttt-tgttttggattttcggcccattagag-tttgcttag 406  Q
    ||||||||||||||| || ||| ||| ||||||  |||||||||||| || ||| ||| |||| |||||||||||||||| ||||||| | ||| |||||    
T  16213 atgtaggagggtttccttggtaatattatttcatcccaattttaataatttttggtttgttttctgttttggattttcggtccattagggttttccttag 16312  T
Q  407 tatttaaaca 416  Q
    ||||||||||    
T  16313 tatttaaaca 16322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 53477454 - 53477379
Alignment:
Q  345 caattttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgcttagtatttaaacactt 419  Q
    ||||||||||| ||  ||||||||||| |||||||||||||||| |||||||||||| |||| |||||||| ||||    
T  53477454 caattttaataatttctgttttattttatgttttggattttcggtccattagagtttccttaatatttaaatactt 53477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 26974935 - 26974822
Alignment:
Q  307 tgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttt-tgttttggattttcggcccattagagtttgctta 405  Q
    ||||||| ||||||||  ||| |||||| ||||||| |||||||||||| || |||||||||||| | |||||| ||||  |  ||||||||||| ||||    
T  26974935 tgatgtatgagggtttttttaatattattatttcaatccaattttaataatttttgttttattttctattttggttttttagttcattagagtttcctta 26974836  T
Q  406 gtatttaaacactt 419  Q
    ||| ||||| ||||    
T  26974835 gtacttaaatactt 26974822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 54700809 - 54700756
Alignment:
Q  347 attttaatacttcttgttttatttttgttttggattttcggcccattagagttt 400  Q
    ||||||||| || ||||||||||||| ||||||||||||| |||||||||||||    
T  54700809 attttaataatttttgttttatttttattttggattttcgacccattagagttt 54700756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 10494695 - 10494806
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgtttta-tttttgttttg 378  Q
    ||||||||||||||| || ||   | |||||||| ||||||||| |||||||| | ||||||| | ||||| | || ||  ||||||| |||||||||||    
T  10494695 gtcgagttcttcagaagtagagaagactgatgtatgagggtttccttagtatttttatttcaaccaaatttcagtaatttctgttttattttttgttttg 10494794  T
Q  379 gattttcggccc 390  Q
    ||||||||||||    
T  10494795 gattttcggccc 10494806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 13085460 - 13085420
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggt 320  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  13085460 gtcgagttcttcagagatggaagagactgatgtaggagggt 13085420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 8536699 - 8536654
Alignment:
Q  278 gagtcgagttcttcagaggtggaaggggctgatgtaggagggtttc 323  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8536699 gagtcgagttctttagaggtggaagaggctgatgtaggagggtttc 8536654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 430
Target Start/End: Original strand, 2688943 - 2689082
Alignment:
Q  281 tcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttatttttgttttgga 380  Q
    |||||||||||| ||||||| | | || ||||||||||||||| |||||||| | ||||||  | ||||||||||           |||| |||||| ||    
T  2688943 tcgagttcttcataggtggaggagactcatgtaggagggtttctttagtatttttatttcagcctaattttaata-----------atttctgttttaga 2689031  T
Q  381 ttttcggcccattagagtttgcttagtatttaaacactt-aattgtagcca 430  Q
    |||| ||||||||||  ||| |||||||||||||||||| |||||||||||    
T  2689032 tttttggcccattaggatttccttagtatttaaacacttcaattgtagcca 2689082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 411
Target Start/End: Complemental strand, 25479682 - 25479603
Alignment:
Q  331 ttataatttcaaaccaattttaatacttcttgttttatttttgttttggattttcggcccattagagtttgcttagtattt 411  Q
    |||| ||||||  |||||||||||| ||  ||||||||||||||||||||||||||  ||||||| |||| ||||||||||    
T  25479682 ttattatttcagcccaattttaataatttctgttttatttttgttttggattttcgatccattagggttt-cttagtattt 25479603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 22922216 - 22922166
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||||| ||| ||||||    
T  22922216 gtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 22922166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 30440575 - 30440632
Alignment:
Q  344 ccaattttaatacttcttgttttatttttg-ttttggattttcggcccattagagttt 400  Q
    |||||||||||| ||  ||||||||||||  |||||||||||||| ||||||||||||    
T  30440575 ccaattttaataatttatgttttattttttattttggattttcggtccattagagttt 30440632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 9868662 - 9868576
Alignment:
Q  307 tgatgtaggagggtttcattagtattataatttcaaaccaattttaatacttcttgttttat-ttttgttttggattttcggcccat 392  Q
    |||| ||||||||||||  ||||||| | |||| || ||||||||||||  | ||||||||| |||| |||||||||||||||||||    
T  9868662 tgatctaggagggtttctatagtatttttattttaacccaattttaataacttttgttttattttttattttggattttcggcccat 9868576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 18252195 - 18252243
Alignment:
Q  284 agttcttcagaggtggaaggggctgatgtaggagggtttcattagtatt 332  Q
    |||||||||||||| || | |||||||| ||||||||||| ||||||||    
T  18252195 agttcttcagaggtagaggaggctgatgcaggagggtttccttagtatt 18252243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 31636059 - 31636108
Alignment:
Q  281 tcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    |||||||||||||||||||| | | ||||||||||||||||| |||||||    
T  31636059 tcgagttcttcagaggtggaggagactgatgtaggagggttttattagta 31636108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 33053191 - 33053243
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagtatt 332  Q
    ||||||||||||||||||||| | | ||||||||| |||||||| ||||||||    
T  33053191 gtcgagttcttcagaggtggaggagactgatgtagaagggtttccttagtatt 33053243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 27952691 - 27952644
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcatta 327  Q
    ||||||||||||||||||||| | | ||||||||||||||||| ||||    
T  27952691 gtcgagttcttcagaggtggaggagactgatgtaggagggttttatta 27952644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 2165647 - 2165697
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||| ||||| ||||||    
T  2165647 gtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagta 2165697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 18203207 - 18203250
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttc 323  Q
    ||||||||||||||||||||| | | ||||||||||||||||||    
T  18203207 gtcgagttcttcagaggtggaggagactgatgtaggagggtttc 18203250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 3541970 - 3542020
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||||| ||| ||||||    
T  3541970 gtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 3542020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 30049640 - 30049690
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||||| ||| ||||||    
T  30049640 gtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 30049690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 30051927 - 30051977
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||||| ||| ||||||    
T  30051927 gtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 30051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 45982 - 45932
Alignment:
Q  280 gtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 330  Q
    ||||||||||||||||||||| | | |||||||||||||| ||| ||||||    
T  45982 gtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 45932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University