View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18139_low_5 (Length: 368)
Name: NF18139_low_5
Description: NF18139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18139_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 109 - 358
Target Start/End: Original strand, 52270987 - 52271236
Alignment:
| Q |
109 |
gttatcataatctcaaagcctgattggtgtacattgcataggttttgtcaatttcgtgaaatactaaaattaatagatcttacatggagttcttcctttt |
208 |
Q |
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| T |
52270987 |
gttatcataatctcaaagcctgattggtgtacattgcataggttttgtcaatttcgtgaaatactaaaattaatagatcttacatggaattcttcctttt |
52271086 |
T |
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| Q |
209 |
atcctggtatcaggaacaacatttaatttctttatgagattgaaaactcctctgctgctttcatcttcagccggtgaaaagaattgagcgttcttctcct |
308 |
Q |
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| T |
52271087 |
atcctggtatcaggaacaacatttaatttctttatgagattgaaaactcccctgctgctttcatcttcagccggtgaaaagaattgagcgttcttctcct |
52271186 |
T |
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| Q |
309 |
gttacacattacaattttgatataaaaacaaaaataatcatcatttcatc |
358 |
Q |
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| T |
52271187 |
gttacacattacaattttgatataaaaacaaaaataatcatcatttcatc |
52271236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 52270870 - 52270988
Alignment:
| Q |
18 |
tatattacctttgatgatttagttatgttttggccaatgtgtggcatatcaaatatggctgcagcatacaataatggaacaaaccgttagcgttatcata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270870 |
tatattacctttgatgatttagttatgttttggccaatgtgtggcatatcaaatatggctgcagcatacaataatggaacaaaccgttagcgttatcata |
52270969 |
T |
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| Q |
118 |
atctcaaagcctgattggt |
136 |
Q |
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| T |
52270970 |
atctcaaagcctgattggt |
52270988 |
T |
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