View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18140_high_1 (Length: 817)

Name: NF18140_high_1
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18140_high_1
NF18140_high_1
[»] chr4 (1 HSPs)
chr4 (18-759)||(9780691-9781428)


Alignment Details
Target: chr4 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 18 - 759
Target Start/End: Complemental strand, 9781428 - 9780691
Alignment:
Q  18 caacaactaacaaaaattatagttgcagataggagttaattggccattattacaccaactaccagccaatcataatagagcaccctactcaatactcatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9781428 caacaactaacaaaaattatagttgcagataggagttaattggccattattacaccaactaccagccaatcgtaatagagcaccctactcaatactcatg 9781329  T
Q  118 gtccctagctccttctctgaatataccaattcatatcttatcttattttcgtcttttcnnnnnnnagttagtaatttgagaatgttgaaaatcacaattt 217  Q
    ||||||    |||||||||||||||||||||||||||||||||||||| |||||||||       | ||||||| |||||||||||||||||||||||||    
T  9781328 gtccct----ccttctctgaatataccaattcatatcttatcttattt-cgtcttttctttttttatttagtaacttgagaatgttgaaaatcacaattt 9781234  T
Q  218 tattatcttatcttctatatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatatttcaaacaaagacatattttaattt 316  Q
    | ||||||||||||||||||  ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  9781233 tcttatcttatcttctatattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatattccaaacaaagacatattttaattt 9781134  T
Q  317 ctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9781133 ctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgttgttgcacatattgcagaagctg 9781034  T
Q  417 atagatttggctacattatttatactcttactccatgctatccttttcttctaggttcaatttcagttgctacgccacattgttgtgaagcagtgaagga 516  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9781033 atagatttgccttcattatttatactcttactccatgctatccttttcttataggttcaatttcagttgctacgccacattgttgtgaagcagtgaagga 9780934  T
Q  517 agttgatgatgacgccaaagactatgatgatcgtctagaaacttgtgactgcttgaaagatatggctctttcttttaagaaggatttcaatgttgaaaat 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9780933 agttgatgatgacgccaaagactatgatgatcgtctagaaacttgtgactgcttgagagatatggctctttcttttaagaaggatttcaatgttgaaaat 9780834  T
Q  617 ggtgctgcactctttgccttatgtggtattcaaacaccctaccagatttctcgtgatatcaactgtaccaagtatgtatactttcactaataattagtat 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  9780833 ggtgctgcactctttgccttatgtggtattcaaacaccctaccagatttctcgagatatcaactgtaccaagtatgtttactttcactaataattagtat 9780734  T
Q  717 tttcatgtagtaacactcttggaccataacaataacataacat 759  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  9780733 tttcatgtaggaacactcttggaccataacaataacataacat 9780691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University