View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_high_10 (Length: 355)
Name: NF18140_high_10
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 26147499 - 26147826
Alignment:
| Q |
13 |
cagattatagtagcttgattttaaatattttccttttgtttttagcatagagtttgttacataaaatactgaaaagacatcaaaaagaaacttcgtttag |
112 |
Q |
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| T |
26147499 |
cagattatagtagcttgattttaaatattttacttttgtttttagcatagagtttgttacataaaatactgaaaagacatcaaatagaaacttcgtttag |
26147598 |
T |
|
| Q |
113 |
aattttctaatatttaaaggaacataccacaattatcatgcttatcatacatttatggcatttatttattgtcacttttcttttccatttctctcccaaa |
212 |
Q |
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| T |
26147599 |
aattttctattatttaaaggaacataccacaattatcatgcttaacatacatttatggcatttatttattgtcacttttcctttccatttctctcccaaa |
26147698 |
T |
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| Q |
213 |
gccgttcaaaacttttaccaagatttaaaaaattccaaattgtttcgaacctggatttgttttaaggtagctgaattcataattacaaaagtattatttt |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26147699 |
gccgttctaaacttttaccaagatttaaaaaattccaaattgtttcgaacctggatttgttttaaggtagctgaattcataattacaaaagtattatttt |
26147798 |
T |
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| Q |
313 |
tggtacgttttgaaaacataggtactaag |
341 |
Q |
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| T |
26147799 |
tcgtacgttttg-aaatataggtactaag |
26147826 |
T |
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