View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_high_17 (Length: 250)
Name: NF18140_high_17
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 55956346 - 55956110
Alignment:
| Q |
1 |
aactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacggatgaggaaaatatgtacatcaca |
100 |
Q |
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| T |
55956346 |
aactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcaca |
55956247 |
T |
|
| Q |
101 |
gcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagttgcactttcactaccactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55956246 |
gcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccactt |
55956147 |
T |
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| Q |
201 |
aatgttactaaaacagctttttctttggtaagtacct |
237 |
Q |
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| T |
55956146 |
aatgttactaaaacagctttttctttggtaagtacct |
55956110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 55959787 - 55959554
Alignment:
| Q |
9 |
gctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacggatgaggaaaatatgtacatcacagcttc--- |
105 |
Q |
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| T |
55959787 |
gctcctaatatattagcctatgattcaactggtattgtctttgctccatacggtgattattggagacaaatgaggaaaatatgtacatcagaacttctta |
55959688 |
T |
|
| Q |
106 |
--ttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagttgcactttcactaccacttaat |
203 |
Q |
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| T |
55959687 |
tattagtgctaaaagggttcaatctttttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgat |
55959588 |
T |
|
| Q |
204 |
gttactaaaacagctttttctttggtaagtacct |
237 |
Q |
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| T |
55959587 |
gttactaaaatagctttctctttggtaagtacct |
55959554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 12426673 - 12426506
Alignment:
| Q |
4 |
tcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacggatgaggaaaatatgtacatcacagct |
103 |
Q |
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| T |
12426673 |
tcctagctccaaatatattaacatatgaatcaaaagatattatctttgcttcatatggtgattattggagacagatgagaaaaatatgtacatcagaact |
12426574 |
T |
|
| Q |
104 |
tcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaat |
171 |
Q |
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| T |
12426573 |
tcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaat |
12426506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 12266198 - 12266314
Alignment:
| Q |
55 |
catacggtgattattggagacggatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggt |
154 |
Q |
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|||| |||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | ||| |
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| T |
12266198 |
catatggtgattattggagacagatgagaaaaatatgtacatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggt |
12266297 |
T |
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| Q |
155 |
gcaaaagctcatacaat |
171 |
Q |
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| T |
12266298 |
ggaaaagatgatacaat |
12266314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 7140643 - 7140753
Alignment:
| Q |
38 |
agatattgtttatgctccatacggtgattattggagacggatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
137 |
Q |
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||||||||| | | ||||||| |||||||||||||||| ||||| ||||||||| | | || |||| ||||||||||||||||| | |||||||| | |
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| T |
7140643 |
agatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtcttagagattctaagtgctaaaagggttcaatctttttcttac |
7140742 |
T |
|
| Q |
138 |
attagagaaga |
148 |
Q |
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||||||||||| |
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| T |
7140743 |
attagagaaga |
7140753 |
T |
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