View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_high_21 (Length: 235)
Name: NF18140_high_21
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 45863350 - 45863552
Alignment:
| Q |
15 |
caaaggttaatataattgaatagttaacatagatagatattgcaacacaaaattctacaaatgtagagttgtaaattgtaatggcacctgattttctgaa |
114 |
Q |
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| T |
45863350 |
caaaggttaatataattgaatagttaacatagatagatattgcaacacaaaattctacaaatgtagagttgtaaattgtaatggcacctgattttctgaa |
45863449 |
T |
|
| Q |
115 |
attcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggatcataagctgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863450 |
attcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggatcataagctgct |
45863549 |
T |
|
| Q |
215 |
ttc |
217 |
Q |
| |
|
||| |
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|
| T |
45863550 |
ttc |
45863552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 45883383 - 45883500
Alignment:
| Q |
100 |
acctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacga |
199 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| || ||||||||||| |
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| T |
45883383 |
acctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacga |
45883482 |
T |
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| Q |
200 |
ggatcataagctgctttc |
217 |
Q |
| |
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|||||||||||||||||| |
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| T |
45883483 |
ggatcataagctgctttc |
45883500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 56209695 - 56209808
Alignment:
| Q |
104 |
gattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggat |
203 |
Q |
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|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
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| T |
56209695 |
gattttctgaaatttaagatttgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgat |
56209794 |
T |
|
| Q |
204 |
cataagctgctttc |
217 |
Q |
| |
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|||||||||||||| |
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| T |
56209795 |
cataagctgctttc |
56209808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 47292507 - 47292392
Alignment:
| Q |
101 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
200 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||||| || ||| |||||| | || |||||||||||| |
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| T |
47292507 |
cctgattttctgaaattcatgatttcctttcgaatttcatgag-tttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgat |
47292409 |
T |
|
| Q |
201 |
gatcataagctgctttc |
217 |
Q |
| |
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||||||| || |||||| |
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| T |
47292408 |
gatcatatgcggctttc |
47292392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 54303422 - 54303382
Alignment:
| Q |
101 |
cctgattttctgaaattcaagatttgtcttcgaatttcatc |
141 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |
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| T |
54303422 |
cctgattttctgaaatttaagatttgccttcgaatttcatc |
54303382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 24348541 - 24348424
Alignment:
| Q |
100 |
acctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacga |
199 |
Q |
| |
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|||||||||| ||||||||||||| || ||||||||||| || ||||| |||| ||||||| |||| ||||||| || ||||| || ||||||| ||| |
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| T |
24348541 |
acctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcga |
24348442 |
T |
|
| Q |
200 |
ggatcataagctgctttc |
217 |
Q |
| |
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|||||||| ||||||||| |
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|
| T |
24348441 |
ggatcataggctgctttc |
24348424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 10520360 - 10520247
Alignment:
| Q |
104 |
gattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggat |
203 |
Q |
| |
|
|||||||||||||| || ||||| ||| |||| |||||| |||||||||||| ||| |||||| || || |||||||| || || ||||||| ||||| |
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| T |
10520360 |
gattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggtcgatatgaagataaacagcggaaatacaaggat |
10520261 |
T |
|
| Q |
204 |
cataagctgctttc |
217 |
Q |
| |
|
|||| ||||||||| |
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| T |
10520260 |
catatgctgctttc |
10520247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 35803493 - 35803610
Alignment:
| Q |
100 |
acctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacga |
199 |
Q |
| |
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|||||||||| | ||||| | ||||||||||||||||||||| ||| ||||| ||||||| ||| | ||| |||||||| | ||| ||||||||| |
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| T |
35803493 |
acctgattttttaaaatttgaaatttgtcttcgaatttcatcaaattttgcccagccacaatctaatgagtgaatatgaagataaatggcggaaatacga |
35803592 |
T |
|
| Q |
200 |
ggatcataagctgctttc |
217 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
35803593 |
ggatcataagcggctttc |
35803610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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