View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_high_4 (Length: 408)
Name: NF18140_high_4
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 6623871 - 6623488
Alignment:
| Q |
18 |
tgatttgcttcgaggaatggagttgaatgtgccactccgatgcgcgtgtccaacatatcatcagaaaacaaatggcaccaagtacttactcacatattct |
117 |
Q |
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| T |
6623871 |
tgatttgcttcgaggaatggagttgaatgtgccactccgatgcgcgtgtccaacatatcatcagaaaacaaatggcaccaagtacttactcacatattct |
6623772 |
T |
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| Q |
118 |
gtgacctggggtgataacatttcaaatatcgctacaagattcaatgtaccagtgggtaatctaattgatgccaatggtttttccacacaaactgaactcc |
217 |
Q |
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| T |
6623771 |
gtgacctggggtgataacatttcaaatattgctacaagattcaatataccagtgggtaatctaattgatgccaatggtttttccacacaaactgaactcc |
6623672 |
T |
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| Q |
218 |
tttttccattcactactgttctgattcctttggcaagcgaaccagtgagtttaacaactatagttgctaatgatccaccaaaccctcttggttgcagctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6623671 |
tttttccattcactactgttctgattcctttggcaagcgaaccagtgagtttaacaactatagttgctaatgatccaccaacccctcttggttgcagctt |
6623572 |
T |
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| Q |
318 |
caaaaagtgcaagtcaaacacaaaagtactcctcattgctttaaccacctcactgctggttctgtgtgttttcttgtctgtgct |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6623571 |
caaaaagtgcaagtcaaacacaaaagtactcctcattgctttaaccacctcactgctggttctgtgtgttttcttgtttgtgct |
6623488 |
T |
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