View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18140_low_11 (Length: 350)

Name: NF18140_low_11
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18140_low_11
NF18140_low_11
[»] chr1 (2 HSPs)
chr1 (100-323)||(19466942-19467161)
chr1 (24-75)||(19466891-19466942)
[»] chr7 (3 HSPs)
chr7 (94-190)||(10168598-10168692)
chr7 (94-190)||(10176123-10176217)
chr7 (141-173)||(10167144-10167176)
[»] chr4 (1 HSPs)
chr4 (237-281)||(53759956-53760000)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 100 - 323
Target Start/End: Original strand, 19466942 - 19467161
Alignment:
Q  100 ccaatttacttctttctcttcccacttttcacacctccgcaaaaccctaatttcacgtacatccacaatgaaaaggaagagaagttcttcttctctcaaa 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  19466942 ccaattttcttctttctcttcccacttttcacacctccgcaaaaccctaatttcac----atccacaatgaaaaggaagagaagttcttcttctctcaaa 19467037  T
Q  200 tcctcacagcaaatacaaatcgtttcttcttccatcaaaacatattcatatttacctgatgaatgctgggaatcgatcttcaggttcatcatcaaccagt 299  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19467038 tcctcacaacaaatacaaatggtttcttcttccatcaaaacatattcatatttacctgatgaatgctgggaatcgatcttcaggttcatcatcaaccagt 19467137  T
Q  300 accaaacagttcctcacaggttct 323  Q
    ||||||||||||||||||| ||||    
T  19467138 accaaacagttcctcacagtttct 19467161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 19466891 - 19466942
Alignment:
Q  24 acaccatcaccaccttgaatcgtgattttccaaaccctaatttaaccaatac 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19466891 acaccatcaccaccttgaatcgtgattttccaaaccctaatttaaccaatac 19466942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 10168598 - 10168692
Alignment:
Q  94 atttatccaatttacttctttctcttcccacttttcacacctccgcaaaaccctaatttcacgtaca-tccacaatgaaaaggaagagaagttcttct 190  Q
    |||| ||||||| || |||||||||||||| ||||||  ||||   |||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10168598 atttttccaattcacctctttctcttcccaattttcattcctc---aaaaccctaatttcacatacaatccacaatgaaaaggaagagaagttcttct 10168692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 10176123 - 10176217
Alignment:
Q  94 atttatccaatttacttctttctcttcccacttttcacacctccgcaaaaccctaatttcacgtaca-tccacaatgaaaaggaagagaagttcttct 190  Q
    |||| ||||||| || |||||||||||||| ||||||  ||||   |||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10176123 atttttccaattcacctctttctcttcccaattttcattcctc---aaaaccctaatttcacatacaatccacaatgaaaaggaagagaagttcttct 10176217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 10167144 - 10167176
Alignment:
Q  141 aaaccctaatttcacgtacatccacaatgaaaa 173  Q
    ||||||||||||||| |||||||||||||||||    
T  10167144 aaaccctaatttcacatacatccacaatgaaaa 10167176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 53759956 - 53760000
Alignment:
Q  237 aaacatattcatatttacctgatgaatgctgggaatcgatcttca 281  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  53759956 aaacacattcagatttacctgatgagtgctgggaatctatcttca 53760000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University