View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18140_low_12 (Length: 348)
Name: NF18140_low_12
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_12 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 47544048 - 47544365
Alignment:
| Q |
18 |
gttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataacccttccgatgcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47544048 |
gttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatagagacaataacccttccgatgcaa |
47544147 |
T |
|
| Q |
118 |
aacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttacttaaattgcttat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
47544148 |
aacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttgcttaaatcgcttat |
47544247 |
T |
|
| Q |
218 |
ccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47544248 |
ccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatac |
47544347 |
T |
|
| Q |
318 |
tgagcttgaaacacaggt |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47544348 |
tgagcttgaaacacaggt |
47544365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 10281776 - 10281666
Alignment:
| Q |
139 |
attctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttacttaaattgcttatccaaacatggtcttaatgcct |
238 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||| | |||| ||| | |||||| |||||||| ||||||||||||| ||||||| || |
|
|
| T |
10281776 |
attctaggagttcaatgtgtttctcataggacatgataaacgcatgtgctat-----tttgtttaattaaattgtttatccaaacatgatcttaatatct |
10281682 |
T |
|
| Q |
239 |
tatgacattgcctttt |
254 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
10281681 |
aatgacactgcctttt |
10281666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 47527689 - 47527761
Alignment:
| Q |
25 |
caatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaa |
100 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||| ||| ||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
47527689 |
caatcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaatggagacaa |
47527761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
| Q |
231 |
taatgccttatgacattgccttttcaggatgctccaaaatagggaatcagcta |
283 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
47528128 |
taatgcctaatgacattgccttt-caggatgctctctaatagggaatcagcta |
47528179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 101340 - 101431
Alignment:
| Q |
29 |
caggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataacccttccgatgcaaaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
101340 |
caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaagaacgcttctgatgcaaaac |
101431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 101435 - 101466
Alignment:
| Q |
139 |
attctaggagttcaatatgtttcacatacgac |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
101435 |
attctaggagttcaatatgtttcacatacgac |
101466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University