View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_15 (Length: 329)
Name: NF18140_low_15
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 44847375 - 44847209
Alignment:
| Q |
104 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
203 |
Q |
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| T |
44847375 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacgattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
44847276 |
T |
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| Q |
204 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
270 |
Q |
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| T |
44847275 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
44847209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 44860199 - 44860140
Alignment:
| Q |
149 |
aacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
208 |
Q |
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| T |
44860199 |
aacaattaaaataggttttagatatataccagatttacagaacgaggaatccgcaacaat |
44860140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 44896259 - 44896161
Alignment:
| Q |
110 |
attattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
208 |
Q |
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| T |
44896259 |
attattagggatttaggatagcagcagcaaggaggatgcaaccattaaaacaagtgttagatatataccaaatttatagaacgaggaattcgcaacaat |
44896161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 44870959 - 44870887
Alignment:
| Q |
120 |
atttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacg |
192 |
Q |
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| T |
44870959 |
atttaggataacaatggcaaggaatatgcaacaattaaaacaggttttagatttataccagatttacaaaacg |
44870887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 44847466 - 44847428
Alignment:
| Q |
19 |
ccaagttgcatgctctttctaagttgagatagagtttta |
57 |
Q |
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| T |
44847466 |
ccaagttgcatgctctttctaagttgagatagagtttta |
44847428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 44896128 - 44896078
Alignment:
| Q |
220 |
ggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
270 |
Q |
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| T |
44896128 |
ggttgacttgtaccatacagtgacgttgaatccattctcattcgaatttag |
44896078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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