View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18140_low_17 (Length: 271)

Name: NF18140_low_17
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18140_low_17
NF18140_low_17
[»] chr4 (3 HSPs)
chr4 (9-271)||(24133133-24133394)
chr4 (18-70)||(14291739-14291791)
chr4 (18-70)||(14307788-14307840)
[»] chr6 (2 HSPs)
chr6 (54-271)||(27852843-27853061)
chr6 (8-49)||(32725575-32725616)
[»] chr2 (1 HSPs)
chr2 (55-174)||(177541-177661)
[»] chr5 (2 HSPs)
chr5 (72-162)||(7817195-7817285)
chr5 (72-164)||(32874455-32874547)
[»] chr1 (3 HSPs)
chr1 (27-164)||(1524984-1525122)
chr1 (10-117)||(43298358-43298466)
chr1 (10-50)||(5193206-5193246)
[»] chr7 (2 HSPs)
chr7 (81-177)||(27153313-27153409)
chr7 (108-164)||(8033740-8033796)
[»] chr3 (3 HSPs)
chr3 (9-73)||(38647269-38647333)
chr3 (8-108)||(17718409-17718510)
chr3 (8-108)||(19019638-19019739)
[»] scaffold0036 (1 HSPs)
scaffold0036 (66-164)||(75961-76059)
[»] chr8 (1 HSPs)
chr8 (9-164)||(38348466-38348622)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 24133394 - 24133133
Alignment:
Q  9 gacatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacgg-aacaaatttcctcccttcaagccttttcatggtc 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||  ||||||    
T  24133394 gacatcaccattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacgggaacatatttcctcccttcaagtcttta-atggtc 24133296  T
Q  108 ttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctcttcattgccatcaataaaattgttcttcaaggtgattggaaccc 207  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24133295 ttagacaatgggacc-tttatctccttatttattcattatttgcatggaaaagctcttcattgccatcaacaaaattgttcttcaaggtgattggaaccc 24133197  T
Q  208 cattcggctctctaacaacgggcctcaattgtctcatcttctctttgctgatgatgtccatctc 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  24133196 cattcagctctctaacaacgggcctcaattgtctcatcttctctttgctgatgacgtccttctc 24133133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 14291739 - 14291791
Alignment:
Q  18 attaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaa 70  Q
    ||||||||||||||||||||||| || || ||  | |||||||||||||||||    
T  14291739 attaagcttatcatgcattgtgtcacctcttccactctctctattctttggaa 14291791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 14307788 - 14307840
Alignment:
Q  18 attaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaa 70  Q
    ||||||||||||||||||||||| || || ||  | |||||||||||||||||    
T  14307788 attaagcttatcatgcattgtgtcacctcttccactctctctattctttggaa 14307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 27853061 - 27852843
Alignment:
Q  54 ctctctattctttggaacggaa-caaatttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgca 152  Q
    |||||||||||||||||||||| |||| | ||| | |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||  |||| |    
T  27853061 ctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgta 27852962  T
Q  153 tggaaaagctcttcattgccatcaataaaattgttcttcaaggtgattggaaccccattcggctctctaacaacgggcctcaattgtctcatcttctctt 252  Q
    |||||||||||| |||||||||||| ||  |||||||||||||  ||||| |||||||||  ||||| ||||| ||||||| ||||||||| ||||| ||    
T  27852961 tggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccattcaactctccaacaatgggcctcgattgtctcaccttctttt 27852862  T
Q  253 tgctgatgatgtccatctc 271  Q
    |||||||||||||| ||||    
T  27852861 tgctgatgatgtccttctc 27852843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 32725616 - 32725575
Alignment:
Q  8 ggacatcatcattaagcttatcatgcattgtgttacatcatc 49  Q
    |||||||| ||| |||||||||||||||||||| ||||||||    
T  32725616 ggacatcaccatcaagcttatcatgcattgtgtcacatcatc 32725575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 177541 - 177661
Alignment:
Q  55 tctctattctttggaacggaa-caaatttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgcat 153  Q
    ||||| |||||||||| |||| |||||  |||||  ||||||||  ||||||||| |||||||| |||||||| ||||||||  ||||||| || |||||    
T  177541 tctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcat 177640  T
Q  154 ggaaaagctcttcattgccat 174  Q
    ||||||||||| | |||||||    
T  177641 ggaaaagctctcccttgccat 177661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 7817195 - 7817285
Alignment:
Q  72 ggaacaaatttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagct 162  Q
    |||||||| ||||| | |||||||||  ||||||||| ||||| || |||||||||||||||||  | |||||| ||||||||||||||||    
T  7817195 ggaacaaacttccttctttcaagcctactcatggtctcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 32874547 - 32874455
Alignment:
Q  72 ggaacaaatttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctct 164  Q
    ||||||| || ||||| |||||||||| |||||| ||  | ||||| |||||  | ||||| ||||||||||| |||||||||||||||||||    
T  32874547 ggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatggaaaagctct 32874455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 1524984 - 1525122
Alignment:
Q  27 atcatgcattgtgttacatcatcttcgctctctattctttggaacgg-aacaaatttcctcccttcaagccttttcatggtcttagacaaggggaccctt 125  Q
    ||||||||||||||||| ||  || |  |||||||||||||||| || |||||||| ||||| ||||||||||  || |||||| | ||||| |||||      
T  1524984 atcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttcggcaaggtgacccgc 1525083  T
Q  126 tatctccttatttattcattatttgcatggaaaagctct 164  Q
    ||||||| || ||||| ||| | || |||||||||||||    
T  1525084 tatctccctacttatttattctctgtatggaaaagctct 1525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 43298358 - 43298466
Alignment:
Q  10 acatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacgg-aacaaatttcctcccttcaagccttttcatggtct 108  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||  |||||||| | |||| ||| || ||||| ||  | || ||||||| |||||||||    
T  43298358 acatcaccatgaagcttatcatgcattgtgtcacatcatcctccttctctattttatggatcggtaataaattgcccacttttaagccttctcatggtct 43298457  T
Q  109 tagacaagg 117  Q
    |||||||||    
T  43298458 tagacaagg 43298466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 5193246 - 5193206
Alignment:
Q  10 acatcatcattaagcttatcatgcattgtgttacatcatct 50  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  5193246 acatcaccatcaagcttatcatgcattgtgtcacatcatct 5193206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 27153313 - 27153409
Alignment:
Q  81 ttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctcttcattgccatcaa 177  Q
    ||||||| |||||||||| |||||| ||| | ||||| |||| | | ||||| |||||||| ||  |||| ||||||||||||| ||||||||||||    
T  27153313 ttcctcctttcaagccttatcatggccttcggcaaggagaccatctctctccctatttatttatcctttgtatggaaaagctctccattgccatcaa 27153409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 8033740 - 8033796
Alignment:
Q  108 ttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctct 164  Q
    ||||||||||||| ||| | ||||||||||||||  | ||||||||||||| |||||    
T  8033740 ttagacaaggggatcctctttctccttatttatttgtcatttgcatggaaaggctct 8033796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 38647333 - 38647269
Alignment:
Q  9 gacatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacgg 73  Q
    ||||||| ||| ||||| ||||||||||||||| |||||||  |  |||||||||||||||||||    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacgg 38647269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 17718510 - 17718409
Alignment:
Q  8 ggacatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacggaa-caaatttcctcccttcaagccttttcatggt 106  Q
    |||| ||| ||| ||||| ||||||||||||||| | |||||  |  |||||||| | ||||| |||| |||| | |||||||||||||||| |||||||    
T  17718510 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 17718411  T
Q  107 ct 108  Q
    ||    
T  17718410 ct 17718409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 19019739 - 19019638
Alignment:
Q  8 ggacatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacggaa-caaatttcctcccttcaagccttttcatggt 106  Q
    |||| ||| ||| ||||| ||||||||||||||| | |||||  |  |||||||| | ||||| |||| |||| | |||||||||||||||| |||||||    
T  19019739 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 19019640  T
Q  107 ct 108  Q
    ||    
T  19019639 ct 19019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 75961 - 76059
Alignment:
Q  66 tggaacggaacaaatttcctcccttcaagccttttcatggtcttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctct 164  Q
    ||||| |||||||  | ||| |||||||||||  ||||||||| |||||||| ||||  || || |||||| | |||||  ||||||||||||||||||    
T  75961 tggaatggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctct 76059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 38348466 - 38348622
Alignment:
Q  9 gacatcatcattaagcttatcatgcattgtgttacatcatcttcgctctctattctttggaacgg-aacaaatttcctcccttcaagccttttcatggtc 107  Q
    ||||||| ||| ||||| ||||||||||||||||| ||| |  |  ||||||| |||||||| || |||| |||  |||| ||||||||||  || | ||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttcccacgatc 38348565  T
Q  108 ttagacaaggggaccctttatctccttatttattcattatttgcatggaaaagctct 164  Q
    || | ||||| ||||   ||||||  |||||||| ||| |||| |||||||||||||    
T  38348566 ttcgtcaaggtgacctgctatctctatatttatttattctttgtatggaaaagctct 38348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University