View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_18 (Length: 269)
Name: NF18140_low_18
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 24940507 - 24940248
Alignment:
| Q |
9 |
aagtatataatatgtacattgaacaaaatgcaatactgagaaattagttgaatcacaacacaagagcaatttatgcttgaccaaatcgatcatattcaca |
108 |
Q |
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| T |
24940507 |
aagtatataatatgtacattgaacaaaatgcaatactcagaaattagttgaatcacaacaaaagagcaatttatgcttggccaaatcgatcatattcata |
24940408 |
T |
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| Q |
109 |
tttgactgtgattcttcgtaatattaaaaaattgcagtacaaccgcaatcgttcctgcatctatgcgctattctaaatttcattcttaagtaacgtgact |
208 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||| ||||| |
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| T |
24940407 |
tttgactgtgattcttcataatattcaaaaattgcagtacaaccgcaatcgttcctgcaactacgcgctattctaaacttcgttcttaagtaacatgact |
24940308 |
T |
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| Q |
209 |
taaaacgtcgcaattcttgatttctaattgtattacgttcgctatatttttaatgaataat |
269 |
Q |
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| T |
24940307 |
tgaaacgtcataattcttgatttttaattgtattgcattcgctat-tttttaacgaataat |
24940248 |
T |
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