View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_20 (Length: 245)
Name: NF18140_low_20
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 8358394 - 8358588
Alignment:
| Q |
18 |
ctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacattaatta-----tattatattaatttagaaaagaaaa |
112 |
Q |
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| T |
8358394 |
ctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacattaattatattatattatattaatttagaaaagaaaa |
8358493 |
T |
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| Q |
113 |
tatgagagacatattttaaactcaattatattgcttacgagtaatattatagaggaaataaataattcacgggcgtgattttcacacgttgcttg |
207 |
Q |
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| T |
8358494 |
tatgagagacatattttaaactcaattatattgcttacaagtaatattatagaggaaataaataattcacggacgtgattttcacacgttgcttg |
8358588 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 28593160 - 28593124
Alignment:
| Q |
34 |
aaatctaggagacttgttctgcaacaaattacagaga |
70 |
Q |
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| T |
28593160 |
aaatctaggagacttgttatgcaacaaattacagaga |
28593124 |
T |
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