View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_27 (Length: 215)
Name: NF18140_low_27
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_27 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0171 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 24940157 - 24939974
Alignment:
| Q |
16 |
aatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacc |
115 |
Q |
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| T |
24940157 |
aatatatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattttgtcaaacc |
24940058 |
T |
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| Q |
116 |
tgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaact |
199 |
Q |
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| T |
24940057 |
tgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaact |
24939974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 25168773 - 25168598
Alignment:
| Q |
19 |
atatcaagtagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgt |
118 |
Q |
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| T |
25168773 |
atatcaagtaaatccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctat |
25168674 |
T |
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| Q |
119 |
ccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacatt |
194 |
Q |
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| T |
25168673 |
cccgaatccttttcagctttttattcattccataaaaatctatattcttaaaaaaccagataaaatccgacacatt |
25168598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 11224 - 11293
Alignment:
| Q |
129 |
tttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaac |
198 |
Q |
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| T |
11224 |
tttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaac |
11293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 19151 - 19011
Alignment:
| Q |
58 |
cttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaattcttttaagccttttattcattccataaaaat |
157 |
Q |
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| T |
19151 |
cttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaacctctccataaccactttaagccttttgttaaatccttgcatat |
19052 |
T |
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| Q |
158 |
ccaaattcttacaaaaccaaataaaatctgacacattaaac |
198 |
Q |
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| T |
19051 |
cccaattcttaaaaaaccaaataaaatccgacaaattaaac |
19011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 24561 - 24418
Alignment:
| Q |
57 |
tcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaat-tcttttaagccttttattcattccataaaa |
155 |
Q |
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| T |
24561 |
tcttttcttcatttcctcttgatgctcccttatgacactctcaatcattgtgtcgaacatgttcataagctctttta-gccttttgttaaatccttgcaa |
24463 |
T |
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| Q |
156 |
atccaaattcttacaaaaccaaataaaatctgacacattaaactg |
200 |
Q |
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| T |
24462 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaactg |
24418 |
T |
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