View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_3 (Length: 437)
Name: NF18140_low_3
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 55956890 - 55956477
Alignment:
| Q |
17 |
gtttttgtactttatatactgcaaaatatgnnnnnnnncgtctttttctgttaaccactacaggtaatttgatacttgtttaatacaacatgcaacaatt |
116 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956890 |
gtttttgtactttatatactgcaaaatatgttttttt-cgtttttttctgttaaccactacaggtaatttgatacttgtttaatacaacatgcaacaatt |
55956792 |
T |
|
| Q |
117 |
cactatcactttttgtcgttgtctttgtcttcaatatactaaatatagtaatatcctggcgagagaagacatagacatagatcagtctcaaggtcataag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
55956791 |
cactatcactttttgtcgttgtctttgtcttcaatatactaaatatagtaatatcctggcgagagaagacttggacatagatcagtctcaaggtcataag |
55956692 |
T |
|
| Q |
217 |
tgccaatttcaatgtatgccatggaattcaaattttccttcctcatcatttcctcattcatcttcttgatactttgtttaacaaagatttataagcagaa |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956691 |
tgccaatttcactgtatgccatggaattcaaattttccttcctcatcatttcctcattcatcttcttgatactttgtttaacaaagatttataagcagaa |
55956592 |
T |
|
| Q |
317 |
aatcaaagtgaagaacgaggttcataaacttccaccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956591 |
aatcaaagtgaagaacgaggttcataaacttccaccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttcca |
55956492 |
T |
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| Q |
417 |
catcatattcttcga |
431 |
Q |
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||||||| ||||||| |
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| T |
55956491 |
catcatactcttcga |
55956477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 55960056 - 55960004
Alignment:
| Q |
231 |
tatgccatggaattcaaattttccttcctcatcatttcctcattcatcttctt |
283 |
Q |
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| T |
55960056 |
tatgccatggaattgaaatcttccttactcatcatttcctcattcatcttctt |
55960004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 423
Target Start/End: Complemental strand, 12426995 - 12426815
Alignment:
| Q |
237 |
atggaattcaaattttccttcctcatcatttcctcattcatcttcttgatactttgtttaacaaagatttataagcagaaaatcaaagtgaagaacgagg |
336 |
Q |
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||||||| ||||| ||||||| | || |||||||||||||||||||| | |||| || |||| || || ||||||||||||||| ||| || | |
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| T |
12426995 |
atggaatccaaatcttccttcttgataatttcctcattcatcttctttctgcttttcctagcaaaaatctacaagcagaaaatcaaaatgaggagc---- |
12426900 |
T |
|
| Q |
337 |
ttcataaacttccaccaggaccatggaagcttcctttaataggaaacttgcatcaactagcattaggaggatcacttccacatcata |
423 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||| |
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| T |
12426899 |
--cataaacttccaccaggaccatggaagcttcctctaataggaaacttgcatcaactagcattagcaggaaaacttccacaccata |
12426815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 12265825 - 12265974
Alignment:
| Q |
237 |
atggaattcaaattttccttcctcatcatttcctcattcatcttcttgatactttgtttaacaaagatttataagcagaaaatcaaagtgaagaacgagg |
336 |
Q |
| |
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|||||| |||||| | ||||| || | |||||||| |||||||||||| || ||| || ||||||| || ||||| ||||||||||||| || | |
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| T |
12265825 |
atggaactcaaatctcccttcttcctaatttcctccttcatcttcttgctaattttcctagcaaagatctacaagcataaaatcaaagtgaggagc---- |
12265920 |
T |
|
| Q |
337 |
ttcataaacttccaccaggaccatggaagcttcctttaataggaaacttgcatcaa |
392 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12265921 |
--cataaacttccaccaggaccatggaagcttcctctaataggaaacttgcatcaa |
12265974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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