View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_5 (Length: 394)
Name: NF18140_low_5
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_5 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 8349473 - 8349622
Alignment:
| Q |
1 |
agttcaagtgatttatgttgggtgtggccgtgtgggtcactgctgctgagtgatatagatattatgaatagaattttagtcttggtatttctttctagct |
100 |
Q |
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| T |
8349473 |
agttcaagtgatttatgttgggtgtggccgtgtgggtcactgctgctgagtgatatagatattatgaatagaattttagtcttgggatttctttctagct |
8349572 |
T |
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| Q |
101 |
attatatttctacaattttacaaccattgttgatattcgtataactaaaa |
150 |
Q |
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| T |
8349573 |
aatatatttctacaattttacaaccattgttgatattcgtataactaaaa |
8349622 |
T |
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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 11993749 - 11993658
Alignment:
| Q |
72 |
aattttagtcttggtatttctttctagctattatatttctacaattttacaaccattgttgatattcgtataactaaaacatttctacaatt |
163 |
Q |
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| T |
11993749 |
aattttagtcttgggatttgtttgtagctaaaatatttctacaattttaccaccactgttgatatgtgtataactaaaacatttctacaatt |
11993658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 44799806 - 44799728
Alignment:
| Q |
297 |
cttaaatttctatgaagaactttatgaaggcttccatatggtaaatactcataaaccaaaaccagttcattcccttcac |
375 |
Q |
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| T |
44799806 |
cttaaattcctatgcagaactttatcaaggcttccatttggtagatactcataaaccaaaaccaattcattcccttcac |
44799728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 44614593 - 44614647
Alignment:
| Q |
127 |
ttgttgatattcgtataactaaaacatttctacaatttttattgcatttctcact |
181 |
Q |
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| T |
44614593 |
ttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcact |
44614647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 44793976 - 44793922
Alignment:
| Q |
127 |
ttgttgatattcgtataactaaaacatttctacaatttttattgcatttctcact |
181 |
Q |
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| T |
44793976 |
ttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcact |
44793922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 27253 - 27216
Alignment:
| Q |
142 |
taactaaaacatttctacaatttttattgcatttctca |
179 |
Q |
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| T |
27253 |
taactaaagcatttctacaatttgtattgcatttctca |
27216 |
T |
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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 171539 - 171576
Alignment:
| Q |
142 |
taactaaaacatttctacaatttttattgcatttctca |
179 |
Q |
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| T |
171539 |
taactaaagcatttctacaatttgtattgcatttctca |
171576 |
T |
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