View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18140_low_6 (Length: 392)
Name: NF18140_low_6
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 8349497 - 8349135
Alignment:
| Q |
1 |
acacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8349497 |
acacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagcattcaataagctcttacaattgtgaa |
8349398 |
T |
|
| Q |
101 |
gtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagagcgtgtcacaaccattgatgcacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8349397 |
gtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagagcgtgtcacaaccattgatgcacatt |
8349298 |
T |
|
| Q |
201 |
gtaccgaatcagcaacttaccgtccatgatttgctgccgaatggatnnnnnnntggaatttagatgtgcttcagcagttcagctgtaccccttttcctct |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349297 |
gtaccgaatcagcaatttaccgtccatgatttgctgccgaatggataaaaaagtggaaattagatgtgcttcagcagttcagctgtaccccttttcctct |
8349198 |
T |
|
| Q |
301 |
ttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349197 |
ttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
8349135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 11993792 - 11994025
Alignment:
| Q |
11 |
taaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| || |||||| |||||| ||| |||||||||||| ||||| || |||||| |||| |||| | |
|
|
| T |
11993792 |
taaatcacttgaactaatgtttttggaagatagtttttttaaacttctcttacaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtaca |
11993890 |
T |
|
| Q |
111 |
aaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggtt-agcaaacaagagcgtgtcacaaccattgatgcacattgtaccgaat |
209 |
Q |
| |
|
| |||||||||||||||||| ||||| ||||||| ||| |||||| |||||| ||||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
11993891 |
agatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaagagcatggaacaaccattgatgcacattgtactgaat |
11993990 |
T |
|
| Q |
210 |
cagcaacttaccgtccatgatttgctgccgaatgg |
244 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||| |
|
|
| T |
11993991 |
cagcaacttaaagtccgagatttgctgcagaatgg |
11994025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University