View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18140_low_7 (Length: 389)
Name: NF18140_low_7
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18140_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 45107768 - 45107910
Alignment:
| Q |
17 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcatggagaaagtt |
116 |
Q |
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| T |
45107768 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcatggagaaagta |
45107867 |
T |
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| Q |
117 |
ttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
159 |
Q |
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| T |
45107868 |
ttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
45107910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 38487240 - 38487098
Alignment:
| Q |
17 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcatggagaaagtt |
116 |
Q |
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| T |
38487240 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgtgggaaagttcaaagaagaatcatggagaaagta |
38487141 |
T |
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| Q |
117 |
ttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
159 |
Q |
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| T |
38487140 |
ttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
38487098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 42877941 - 42877852
Alignment:
| Q |
17 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcat |
106 |
Q |
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| T |
42877941 |
aacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgtgggaaagttcaaagaagaatcat |
42877852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 4930324 - 4930476
Alignment:
| Q |
17 |
aacaagaattttaaaatatattata--tatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttca----------------aaga |
98 |
Q |
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| T |
4930324 |
aacaagaattttaaaatatattatatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagtacagagaagaatcatagagaaga |
4930423 |
T |
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| Q |
99 |
agaatcatggagaaagttttacgacacagtagagaacgagtgaggaaggagaa |
151 |
Q |
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| T |
4930424 |
agaatcatggagaaagtattacgacacagcagagaacgagtgaggaaggagaa |
4930476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 1859569 - 1859655
Alignment:
| Q |
26 |
tttaaaatatattatatatttgctggaacaa-gatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcatggaga |
111 |
Q |
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||||||| ||||||||| ||||||||||||| || ||||| ||||||||| ||||||||| |||||| | | |||||||||||||| |
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| T |
1859569 |
tttaaaagatattatatttttgctggaacaaggagatttggattgatataacttgttgagagaaagtatagaaaagaatcatggaga |
1859655 |
T |
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