View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18140_low_8 (Length: 388)

Name: NF18140_low_8
Description: NF18140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18140_low_8
NF18140_low_8
[»] chr1 (13 HSPs)
chr1 (1-286)||(1868224-1868509)
chr1 (175-388)||(9170679-9170892)
chr1 (11-286)||(1842625-1842900)
chr1 (175-388)||(9200246-9200459)
chr1 (166-388)||(9118377-9118599)
chr1 (175-388)||(9218762-9218975)
chr1 (178-388)||(9161853-9162063)
chr1 (181-388)||(9155941-9156148)
chr1 (153-301)||(1856781-1856929)
chr1 (162-301)||(1816115-1816254)
chr1 (175-388)||(9229647-9229860)
chr1 (14-108)||(9162133-9162227)
chr1 (46-111)||(9219039-9219104)
[»] chr7 (2 HSPs)
chr7 (175-239)||(37567745-37567809)
chr7 (236-301)||(37572121-37572186)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 1868224 - 1868509
Alignment:
Q  1 actcaaagtgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagagtttaatcattggcaaaggtggttttggtactggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||    
T  1868224 actcaaagtgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttt 1868323  T
Q  101 tcaaaggaattctagatgataaaagaatcgttgctatcnnnnnnnnnnnnntaatagatagaagccaaatcaatcaattcattaatgaggtagttgttct 200  Q
    |||||||| |||||||||||||||||||||||||||||             |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  1868324 tcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttct 1868423  T
Q  201 ctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtatgaatttgtta 286  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  1868424 ctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 1868509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 9170892 - 9170679
Alignment:
Q  175 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt 274  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9170892 caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt 9170793  T
Q  275 atgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcaga 374  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9170792 acgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcaga 9170693  T
Q  375 gacagctggagctt 388  Q
    ||||||||||||||    
T  9170692 gacagctggagctt 9170679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 1842625 - 1842900
Alignment:
Q  11 ctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagagtttaatcattggcaaaggtggttttggtactggtttcaaaggaat 110  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||| || ||||||| |    
T  1842625 ctaaaatattcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatt 1842724  T
Q  111 tctagatgataaaagaatcgttgctatcnnnnnnnnnnnnntaatagatagaagccaaatcaatcaattcattaatgaggtagttgttctctctcaaata 210  Q
    ||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  1842725 tctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaata 1842824  T
Q  211 aatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtatgaatttgtta 286  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  1842825 aatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 1842900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 9200459 - 9200246
Alignment:
Q  175 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt 274  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9200459 caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagttccttcattagtgt 9200360  T
Q  275 atgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcaga 374  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||    
T  9200359 acgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaacacgtttaaggatagcagcgga 9200260  T
Q  375 gacagctggagctt 388  Q
    ||||||||||||||    
T  9200259 gacagctggagctt 9200246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 166 - 388
Target Start/End: Original strand, 9118377 - 9118599
Alignment:
Q  166 caaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttcctt 265  Q
    |||||| | ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  9118377 caaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagacagaagttcctt 9118476  T
Q  266 cattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggat 365  Q
    | ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||  |||||| ||||||||||| |||| |||| ||  |||||||    
T  9118477 ccttggtctatgaattcgttagccacggtacacttttcgatttcatacaaaatactaagaataaaataaataatccaagatgggaaacacgtctaaggat 9118576  T
Q  366 agcagcagagacagctggagctt 388  Q
    |||||||||||||||||||||||    
T  9118577 agcagcagagacagctggagctt 9118599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 9218975 - 9218762
Alignment:
Q  175 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt 274  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||  ||||||||||| | ||||||||||||||||| |||||||    
T  9218975 caattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttccttcgttggtgt 9218876  T
Q  275 atgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcaga 374  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |  |||||||||| |||| |||||| |||||||||| || |||||||||||||||||    
T  9218875 atgaatttgttagcaacggaacactttttgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaacacgtttaaggatagcagcaga 9218776  T
Q  375 gacagctggagctt 388  Q
    ||||||||| ||||    
T  9218775 gacagctggtgctt 9218762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 178 - 388
Target Start/End: Complemental strand, 9162063 - 9161853
Alignment:
Q  178 ttcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtatg 277  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| | || |||||| ||||||||||||||||||| ||||||||||    
T  9162063 ttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttcgttggtgtatg 9161964  T
Q  278 aatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcagagac 377  Q
    |||| |||||||| ||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||| || |||| |||||||||||||||    
T  9161963 aattcgttagcaatggtacacttttcgatttcatacataatactaaagataaagcaaacaatccaacatggaaaacacgtttaaagatagcagcagagac 9161864  T
Q  378 agctggagctt 388  Q
    ||| |||||||    
T  9161863 agccggagctt 9161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 181 - 388
Target Start/End: Complemental strand, 9156148 - 9155941
Alignment:
Q  181 attaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtatgaat 280  Q
    ||||||||||||||||| || || ||||||||||| || ||||||||||||||| | || |||||| ||||||||||||||||||| ||||| |||||||    
T  9156148 attaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttccttggtttatgaat 9156049  T
Q  281 ttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcagagacagc 380  Q
    | |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  9156048 tcgttagcaatggtacactttttgatttcatacatagtactaaagataaaacaaacaatccaacatggaaaacccgtttaaagatagcagcagagacagc 9155949  T
Q  381 tggagctt 388  Q
     |||||||    
T  9155948 cggagctt 9155941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 1856781 - 1856929
Alignment:
Q  153 aatagatagaagccaaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagag 252  Q
    |||||| | |||||||||  | ||||||||||||||||| | |||| |||||||||||||||| || ||||| ||||||||| ||||||||||||||||     
T  1856781 aatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaa 1856880  T
Q  253 acagaagttccttcattggtgtatgaatttgttagcaacggtacacttt 301  Q
    |||||||||||||  ||||| ||||| ||||||||||| ||||| ||||    
T  1856881 acagaagttcctttgttggtttatgagtttgttagcaatggtactcttt 1856929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 1816254 - 1816115
Alignment:
Q  162 aagccaaatcaatcaattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagtt 261  Q
    |||||||||  | ||||||||||| ||||| | |||| |||||||||||||||| |||||||| ||||||||| | |||||||||||||| |||||||||    
T  1816254 aagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagtt 1816155  T
Q  262 ccttcattggtgtatgaatttgttagcaacggtacacttt 301  Q
    ||||  ||||| ||||| ||||||||||| ||||| ||||    
T  1816154 cctttgttggtttatgagtttgttagcaatggtactcttt 1816115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 9229860 - 9229647
Alignment:
Q  175 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt 274  Q
    |||||||| |||||||| |||||| | || |||||||||||||| ||||||||||||||| | || |||||| | |||||| ||||||||| | | || |    
T  9229860 caattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagttt 9229761  T
Q  275 atgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcaga 374  Q
    |||||||| ||||||| ||||| ||||||||||| || || | || ||  || ||   ||||||| ||| ||||||||| || |||||||||||||| ||    
T  9229760 atgaatttattagcaatggtacccttttcgatttgatgcacactagtattgaaaaggaaaataatgcaatatggaaaacgcgtttaaggatagcagcgga 9229661  T
Q  375 gacagctggagctt 388  Q
     | ||| |||||||    
T  9229660 aatagcaggagctt 9229647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 9162227 - 9162133
Alignment:
Q  14 aaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagagtttaatcattggcaaaggtggttttggtactggtttcaaagga 108  Q
    ||||||||||| ||||  | ||||| || || |||||||||| ||| || || |||||||| |||| ||| ||||||||||| | ||||||||||    
T  9162227 aaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaagga 9162133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9219104 - 9219039
Alignment:
Q  46 accaaaaacttcgacgagagtttaatcattggcaaaggtggttttggtactggtttcaaaggaatt 111  Q
    |||||||||| |||||| || |||||||| || | ||| ||||||||||| | |||||||||||||    
T  9219104 accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaatt 9219039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 37567745 - 37567809
Alignment:
Q  175 caattcattaatgaggtagttgttctctctcaaataaatcataggaatgttgtcaaactcctagg 239  Q
    ||||||||||||||||| |   || ||||||||||||||||||||||||| ||||||||| ||||    
T  37567745 caattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtcaaactcttagg 37567809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 37572121 - 37572186
Alignment:
Q  236 tagggtgttgtctagagacagaagttccttcattggtgtatgaatttgttagcaacggtacacttt 301  Q
    |||||||||||||||| ||||||||||||   ||||| ||||| ||||||||||| ||||| ||||    
T  37572121 tagggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactcttt 37572186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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