View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18141_high_2 (Length: 574)
Name: NF18141_high_2
Description: NF18141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18141_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 65 - 546
Target Start/End: Original strand, 8777466 - 8777942
Alignment:
| Q |
65 |
ttagagaaaacattgatatgttcgattggactgcaacatccatgcatggaattaacctcaatatagtatgtaccaaatggcaatcaaccctaatgcaaaa |
164 |
Q |
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| T |
8777466 |
ttagataaaacattgatatgttcgattggactgcaacatccatgcatggaattaacctcaatatagcatgtaccaaatggcaatcaaccctaatgcaaaa |
8777565 |
T |
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| Q |
165 |
acagtggctcagcgccgtaagaagaagtctcccaaaaagggaggctgcagaaaaagttggaaaaaacctcctacaagaaaattgtatttttgaggcaagg |
264 |
Q |
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| T |
8777566 |
acagtggctcagcgccgtaagaagaagtctcccaaaaagggaggctgcagaaaaagttggaaaaaacctcctacaagaaaattgtatttttgaggcaagg |
8777665 |
T |
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| Q |
265 |
tgttggttcttcaatgttgtgctcgttaagaaatctaatgaaaaatgatgcatgtgtgttgttacacagagcatatccccaaatatgaggggatcattcg |
364 |
Q |
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| T |
8777666 |
tgttggttcttcaatgttgtgctcgttaagaaatctaatgaaaaattatgcatgtgtgttgttacacagagcatatccccaaat-----gggatcattca |
8777760 |
T |
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| Q |
365 |
taagtacaggaaactcagttaaactatataagtgttcttgcctatcagggtggatggttactccgatatcacgattaacctcgtaacaacttgacttaaa |
464 |
Q |
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| T |
8777761 |
taagtacagggaactcacttaaactgtataagtgttcttgcctatcagggtggatggttactccggtatcacgattaacctcgtaacaacttgacttaaa |
8777860 |
T |
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| Q |
465 |
ctaaagggataagataacaatcaattgagaagcctatcaccgaattcattgctataaataaggggcatatcccccgcgcgcg |
546 |
Q |
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| T |
8777861 |
ctaaggagataagataacaatcaattgagaagcctatcaccgaattcactgctataaataaggggcatatcccccgcgcgcg |
8777942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 8762800 - 8762855
Alignment:
| Q |
14 |
atgaacatggatgccaaaactggtaattaagggcgcggttcaatgcatgcattaga |
69 |
Q |
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| T |
8762800 |
atgaacatggatgccaaaactggtaattaagggcgcagttcaatgcatgcattaga |
8762855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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