View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18141_high_5 (Length: 297)
Name: NF18141_high_5
Description: NF18141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18141_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 40886960 - 40887163
Alignment:
| Q |
14 |
agatagagcaacaatatagttgcattaattcaccacacccataattatttctggtaagcattattttgacttgaataaataactttttggtgagatagtt |
113 |
Q |
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| T |
40886960 |
agatagagcaacaatatagttgcattaattcaccacacccataattatttctggtaagcattattttgacttgaataaataactttttggtgagatagtt |
40887059 |
T |
|
| Q |
114 |
taaaggccaactaaggagcattgagatgttcccatcaactttccattcttatcactaattttgttctgc-aattttgatcttgtgttgatctcctttatc |
212 |
Q |
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| T |
40887060 |
taaaggccaactaaggagcattgagatgttcccatcaactttccattcttatcactaattttgttctgcaaattttgatcttgtgttgatctcctttatc |
40887159 |
T |
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| Q |
213 |
aatt |
216 |
Q |
| |
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|||| |
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|
| T |
40887160 |
aatt |
40887163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 40887167 - 40887211
Alignment:
| Q |
237 |
agattatgaaatataatttacacatcatgaacaataaacttcgat |
281 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
40887167 |
agatcatgaaatataatttacacatcataaacaataaacttcgat |
40887211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 42258285 - 42258239
Alignment:
| Q |
229 |
ttcatcatagattatgaaatataatttacacatcatgaacaataaac |
275 |
Q |
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||||||| |||| |||||||||||||||||||| ||||| ||||||| |
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| T |
42258285 |
ttcatcacagatcatgaaatataatttacacatgatgaataataaac |
42258239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 39906268 - 39906222
Alignment:
| Q |
229 |
ttcatcatagattatgaaatataatttacacatcatgaacaataaac |
275 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
39906268 |
ttcatcacagatcatgaaatataatttacacatgatgaacaataaac |
39906222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 2767008 - 2766955
Alignment:
| Q |
229 |
ttcatcatagattatgaaatataatttacacatcatgaacaataaacttcgatc |
282 |
Q |
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||||||| | || ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
2767008 |
ttcatcacaaatcatgaactataatttacacattatgaacaataaacttcgatc |
2766955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 22727017 - 22726971
Alignment:
| Q |
229 |
ttcatcatagattatgaaatataatttacacatcatgaacaataaac |
275 |
Q |
| |
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||||||| ||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
22727017 |
ttcatcacggatcatgaaatataatttacacatgatgaacaataaac |
22726971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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