View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18141_high_6 (Length: 290)
Name: NF18141_high_6
Description: NF18141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18141_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 7260281 - 7260541
Alignment:
| Q |
19 |
gttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260281 |
gttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaag |
7260380 |
T |
|
| Q |
119 |
gtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcact |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260381 |
gtttgttgcattttcaagctactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcact |
7260480 |
T |
|
| Q |
219 |
ttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctgttctt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7260481 |
ttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctgttctt |
7260541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
94 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
135 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
94 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
193 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||| | | |||||||| |||| ||| ||||||| | |||||||||||| | ||||| |
|
|
| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
|
| Q |
194 |
g |
194 |
Q |
| |
|
| |
|
|
| T |
7287383 |
g |
7287383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
42 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
131 |
Q |
| |
|
|||||| |||||||| || || ||||||||||| || || ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University