View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18141_high_9 (Length: 214)
Name: NF18141_high_9
Description: NF18141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18141_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15020710 - 15020516
Alignment:
| Q |
16 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgc--atgtcgttgctttctgctt |
113 |
Q |
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| T |
15020710 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgctcatgtcgttgctttctggtt |
15020611 |
T |
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| Q |
114 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
208 |
Q |
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| T |
15020610 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
15020516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15027828 - 15027634
Alignment:
| Q |
16 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgc--atgtcgttgctttctgctt |
113 |
Q |
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| T |
15027828 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgctcatgtcgttgctttctggtt |
15027729 |
T |
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| Q |
114 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
208 |
Q |
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| T |
15027728 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
15027634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15045953 - 15045759
Alignment:
| Q |
16 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgc--atgtcgttgctttctgctt |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15045953 |
cagagggggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtcgttgtcgtcctaatgtggttacgctcatgtcgttgctttctgctt |
15045854 |
T |
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| Q |
114 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15045853 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcagttaaatttattctcaagggggagcataatgatgatactgatgat |
15045759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15006593 - 15006399
Alignment:
| Q |
16 |
cagagagggtttggttgtgaagcaatggatgtgtttcggcaaatgtgtggatgtagttgtcgtcctaatgtggttacgc--atgtcgttgctttctgctt |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
15006593 |
cagagaggatttggttgtgaagcaatggatgtgtttcggaaaatgtgtggatgtcgttgtcgtcctaatgtggttaagctcatgtctttgctttctgctt |
15006494 |
T |
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| Q |
114 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcaattaaatttattctcaagggggagcataatgatgataatgatgat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15006493 |
gtgcgtctgttggagctttgcttcatggaaaagaaactcattgttattcagttaaatttattctcaagggggagcataatgatgataatgatgat |
15006399 |
T |
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