View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18141_low_9 (Length: 260)
Name: NF18141_low_9
Description: NF18141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18141_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48767346 - 48767601
Alignment:
| Q |
1 |
tgatctgtttcctgtatattcttgtatgatgcacaactacaagatggtctttatatataaactgannnnnnn-ccacttttgagatgtttggatatccac |
99 |
Q |
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| T |
48767346 |
tgatctgtttcctgtatattcttgtatgatgcacaactacaagatggtctttatatataaactgattttttttccacttttgagatgtttggatatccac |
48767445 |
T |
|
| Q |
100 |
ctcttcaccaatgcacaaaccctctaactgtggccggcaaattggttggagctactatgagaagaagtgccatggttcatcaagaaacgaacaacgacac |
199 |
Q |
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| T |
48767446 |
ctcttcaccaatgcacaaaccctctaactgtggccggcaaattggttggagctactatgagaagaagtgccttggttcatcaagaaacgaacaacgacac |
48767545 |
T |
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| Q |
200 |
aagtgatattgtcagcactacctctctgatatgcttcttgcatcagtctctctgct |
255 |
Q |
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| T |
48767546 |
aagtgatattgtcagcactacctctctgatatgcttcttgcatcagtctctttgct |
48767601 |
T |
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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 3412411 - 3412330
Alignment:
| Q |
174 |
gttcatcaagaaacgaacaacgacacaagtgatattgtcagcactacctctctgatatgcttcttgcatcagtctctctgct |
255 |
Q |
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| T |
3412411 |
gttcatcaggaaacgaacgacgacacaagtaatgttgtcagaactacctctctgatacgcttctttcatcagcctctttgct |
3412330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 3434414 - 3434495
Alignment:
| Q |
174 |
gttcatcaagaaacgaacaacgacacaagtgatattgtcagcactacctctctgatatgcttcttgcatcagtctctctgct |
255 |
Q |
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|||||||| ||||||||| ||||||||||| || ||||||| ||||||||||||||| ||||||| |||||| |||| |||| |
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| T |
3434414 |
gttcatcaggaaacgaacgacgacacaagtaatgttgtcagaactacctctctgatacgcttctttcatcagcctctttgct |
3434495 |
T |
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