View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18142_high_4 (Length: 392)

Name: NF18142_high_4
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18142_high_4
NF18142_high_4
[»] chr1 (12 HSPs)
chr1 (18-392)||(8280931-8281305)
chr1 (237-384)||(35109652-35109797)
chr1 (272-384)||(32737113-32737229)
chr1 (221-346)||(10996771-10996896)
chr1 (320-376)||(48382607-48382663)
chr1 (259-317)||(17345707-17345766)
chr1 (271-380)||(27104493-27104603)
chr1 (309-380)||(29651716-29651787)
chr1 (259-317)||(50521291-50521350)
chr1 (316-378)||(16124640-16124702)
chr1 (316-380)||(775584-775648)
chr1 (316-380)||(13598310-13598374)
[»] scaffold0076 (1 HSPs)
scaffold0076 (220-376)||(16114-16265)
[»] chr6 (12 HSPs)
chr6 (259-377)||(33721683-33721804)
chr6 (259-316)||(31077146-31077203)
chr6 (247-373)||(98998-99125)
chr6 (246-317)||(27165539-27165611)
chr6 (316-380)||(31979425-31979489)
chr6 (246-317)||(1115290-1115361)
chr6 (309-378)||(22963605-22963674)
chr6 (309-378)||(23824719-23824788)
chr6 (316-380)||(4629865-4629929)
chr6 (316-380)||(5017590-5017653)
chr6 (316-380)||(10077286-10077350)
chr6 (309-377)||(30519145-30519213)
[»] chr5 (9 HSPs)
chr5 (276-389)||(5611009-5611128)
chr5 (254-387)||(34842449-34842587)
chr5 (279-317)||(28537489-28537527)
chr5 (220-317)||(30899668-30899765)
chr5 (272-317)||(2630087-2630132)
chr5 (271-380)||(3880165-3880276)
chr5 (259-379)||(14520079-14520203)
chr5 (316-380)||(12084298-12084361)
chr5 (316-380)||(17004081-17004144)
[»] chr4 (8 HSPs)
chr4 (237-376)||(4956015-4956157)
chr4 (220-377)||(37781673-37781836)
chr4 (220-298)||(873731-873809)
chr4 (271-341)||(42234512-42234579)
chr4 (272-317)||(5112103-5112148)
chr4 (316-380)||(16630802-16630865)
chr4 (316-380)||(25862143-25862207)
chr4 (316-380)||(38152560-38152623)
[»] chr3 (12 HSPs)
chr3 (276-389)||(21156296-21156415)
chr3 (272-373)||(29100033-29100137)
chr3 (259-380)||(30709903-30710028)
chr3 (283-377)||(34482074-34482174)
chr3 (259-380)||(8370599-8370724)
chr3 (272-317)||(4387110-4387155)
chr3 (272-317)||(25516843-25516888)
chr3 (316-377)||(25929556-25929617)
chr3 (316-380)||(8126613-8126677)
chr3 (316-380)||(26298900-26298964)
chr3 (316-380)||(27026857-27026920)
chr3 (259-335)||(47924028-47924106)
[»] chr2 (8 HSPs)
chr2 (220-317)||(16388259-16388355)
chr2 (219-346)||(16388625-16388760)
chr2 (311-376)||(28770899-28770964)
chr2 (309-377)||(3277908-3277976)
chr2 (309-380)||(2869815-2869886)
chr2 (272-317)||(2869887-2869932)
chr2 (316-380)||(8039972-8040036)
chr2 (316-380)||(31055954-31056018)
[»] scaffold0036 (1 HSPs)
scaffold0036 (259-380)||(85535-85659)
[»] chr8 (9 HSPs)
chr8 (246-310)||(7493264-7493328)
chr8 (310-376)||(11771855-11771921)
chr8 (295-346)||(32916304-32916355)
chr8 (317-376)||(28387895-28387955)
chr8 (302-384)||(34477335-34477417)
chr8 (272-317)||(5990748-5990793)
chr8 (272-317)||(28307424-28307469)
chr8 (316-380)||(4696717-4696781)
chr8 (316-380)||(26403351-26403415)
[»] chr7 (8 HSPs)
chr7 (271-380)||(9185284-9185397)
chr7 (271-380)||(9190129-9190242)
chr7 (316-380)||(55860-55923)
chr7 (309-380)||(2647817-2647888)
chr7 (259-314)||(28617420-28617475)
chr7 (310-384)||(23575488-23575564)
chr7 (316-380)||(4796788-4796852)
chr7 (316-380)||(29159715-29159779)
[»] scaffold0148 (1 HSPs)
scaffold0148 (309-380)||(10634-10705)
[»] scaffold0002 (1 HSPs)
scaffold0002 (272-346)||(14548-14627)
[»] scaffold0184 (1 HSPs)
scaffold0184 (272-317)||(29679-29724)
[»] scaffold0078 (1 HSPs)
scaffold0078 (272-317)||(43120-43165)
[»] scaffold0006 (2 HSPs)
scaffold0006 (316-380)||(2404-2468)
scaffold0006 (316-380)||(5595-5659)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 8280931 - 8281305
Alignment:
Q  18 gcatagacgtcaataatcggagaaactaaattgatgaatgaatacaattacatgaataagtatttagttggatgctagcgtaaatgtctagcattgaagc 117  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8280931 gcatagacgtcaataatccgagaaactaaattaatgaatgaatacaattacatgaataagtatttagttggatgctagcgtaaatgtctagcattgaagc 8281030  T
Q  118 acatatattcttctcaaattaggcggatcgcagtgttagacacaagtttgtgtttgacagttgacgcaacatgatattgatatatacgattatattgaat 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8281031 acatatattcttctcaaattaggcggatcgcagtgttggacacaagtttgtgtttgacaattgacgcaacatgatattgatatatacgattatattgaat 8281130  T
Q  218 tatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  8281131 tatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaagcaacaacaa 8281230  T
Q  318 acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggag 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8281231 acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacagagataagcaagaagggaaggag 8281305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 384
Target Start/End: Complemental strand, 35109797 - 35109652
Alignment:
Q  237 aataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaaacagacctagatctaagta 336  Q
    |||||| | ||||||| ||||||||||||||||  ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||     
T  35109797 aataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatgc--aaagtagtctcaagcaacaacaaacagacctagatctaagtg 35109700  T
Q  337 tgaagcaacatcagacacataatcaaagcaacaaagataagcaagaag 384  Q
     | | ||||| || | ||||||| |||| |||||||| ||| ||||||    
T  35109699 cggaacaacaccacaaacataattaaagaaacaaagagaagaaagaag 35109652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 32737229 - 32737113
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaac----aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaa 367  Q
    ||||||||| || ||||||||| ||||||| |||||||||||||    |||||||| ||||||||||| |||||||||| || | | ||||||||||| |    
T  32737229 aaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacgaaacagacttagatctaagtgtgaagcaacaccacaaatataatcaaagcta 32737130  T
Q  368 caaagataagcaagaag 384  Q
    ||| || ||| ||||||    
T  32737129 caatgaaaagaaagaag 32737113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 10996771 - 10996896
Alignment:
Q  221 gttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaaaca 320  Q
    ||||||||||| ||| || ||| | ||||||| |||||| || ||||||  |||| |||||||||||||||| |||||||| ||||||  |||||||| |    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctcaaggtacaacaaata 10996870  T
Q  321 gacctagatctaagtatgaagcaaca 346  Q
    | |||| |  ||||| ||||||||||    
T  10996871 gtcctaaaattaagtgtgaagcaaca 10996896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 48382663 - 48382607
Alignment:
Q  320 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
    |||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||    
T  48382663 agacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 17345766 - 17345707
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagt-aaagtagtctcaagcaacaacaa 317  Q
    |||||||| ||  ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  17345766 agatgtgtggagcaaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaa 17345707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 27104603 - 27104493
Alignment:
Q  271 aaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaaa-cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 368  Q
    |||||||||| |||||||||   |||||| ||||| ||||||||||||| |||||||| |||||||| |  ||||||| || |  ||||||||||||||     
T  27104603 aaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaat 27104505  T
Q  369 aaagataagcaa 380  Q
    ||||||||||||    
T  27104504 aaagataagcaa 27104493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 29651716 - 29651787
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||| |||||||| ||||||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 29651787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 50521350 - 50521291
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagt-aaagtagtctcaagcaacaacaa 317  Q
    |||||||| ||  ||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  50521350 agatgtgtggagtaaaggaagtggtaatcaatgagtaaaagtagtctcaaacaacaacaa 50521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 16124702 - 16124640
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc 378  Q
    |||||||||||||||||| | |  ||||||| || | ||||||||||||||| ||||||||||    
T  16124702 aaacagacctagatctaaatgtagagcaacaccacaaacataatcaaagcaataaagataagc 16124640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 775584 - 775648
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  775584 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 775648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 13598310 - 13598374
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| ||||||||||||    
T  13598310 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaa 13598374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 376
Target Start/End: Complemental strand, 16265 - 16114
Alignment:
Q  220 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaaac 319  Q
    |||||||||||  |||||||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||||||     || |||||||||||||||     
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta-----gtttcaagcaacaacaaat 16171  T
Q  320 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
      |||||||||||||| |||| ||||| || | ||||| ||||||||||||||||||    
T  16170 ttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataa 16114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 33721804 - 33721683
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaaca---acaaacagacctagatctaagtatgaagcaacatcagacaca 355  Q
    |||||||| ||  |||||||||||||||| |||||||||||||| ||||||||||   |||||||  ||||||||||||| |||| || || || | |||    
T  33721804 agatgtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaaca 33721705  T
Q  356 taatcaaagcaacaaagataag 377  Q
    || |||||||||||||||||||    
T  33721704 tattcaaagcaacaaagataag 33721683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 31077203 - 31077146
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaaca 316  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||    
T  31077203 agatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaagcaataaca 31077146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 373
Target Start/End: Original strand, 98998 - 99125
Alignment:
Q  247 ccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaaa-cagacctagatctaagtatgaagcaac 345  Q
    |||||| |||||| | |||| ||  |||||||||||||||||||||| |||||||||| ||||||||||||| || || || ||| |||| | ||| |||    
T  98998 ccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaacaaaacaaacatatatccaagtgtaaagaaac 99097  T
Q  346 atcagacacataatcaaagcaacaaaga 373  Q
    | |  | ||||| |||||||||||||||    
T  99098 accgcaaacatactcaaagcaacaaaga 99125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 27165539 - 27165611
Alignment:
Q  246 accaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaa-gtagtctcaagcaacaacaa 317  Q
    ||||||| |||  |||||||| ||  ||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  27165539 accaatataacaaagatgtgtggagcaaaggaagtcgtaatcaatgagcaaaagtagtctcaagcaacaacaa 27165611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 31979425 - 31979489
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  |||||||||| |  |||||||||||||| ||||||||||||    
T  31979425 aaacagacctaaatctaagtgtagagcaacatcacaagcataatcaaagcaataaagataagcaa 31979489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 1115361 - 1115290
Alignment:
Q  246 accaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||| ||||||||| | | ||  ||| |||||||||||||||||| |||||||  ||||||||||||||    
T  1115361 accaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaacaa 1115290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 22963605 - 22963674
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc 378  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | ||||||||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagc 22963674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 23824788 - 23824719
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc 378  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | ||||||||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagc 23824719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 4629865 - 4629929
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  4629865 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 4629929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 5017653 - 5017590
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  5017653 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 5017590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 10077350 - 10077286
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  10077350 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 10077286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 30519213 - 30519145
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 377  Q
    |||||||||||| |  ||||| ||||| |||||||||| || | ||||| | |||||||||||||||||    
T  30519213 caacaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataag 30519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 5611009 - 5611128
Alignment:
Q  276 gaagtagtaatcaatgagtaaagtagtctcaagcaac------aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 369  Q
    ||||||||||||||||||||||||||||| |||||||      |||||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  5611009 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 5611108  T
Q  370 aagataagcaagaagggaag 389  Q
    |||||||| |||||||||||    
T  5611109 aagataagaaagaagggaag 5611128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 387
Target Start/End: Original strand, 34842449 - 34842587
Alignment:
Q  254 aacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaag------caacaacaaacagacctagatctaagtatgaagcaacat 347  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||      |||||| ||||| |||||||||||||| ||||||||||     
T  34842449 aacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaacac 34842547  T
Q  348 cagacacataatcaaagcaacaaagataagcaagaaggga 387  Q
    || |  ||||  | |||||||||||||||| |||| ||||    
T  34842548 cacaagcatatccgaagcaacaaagataagaaagatggga 34842587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 28537489 - 28537527
Alignment:
Q  279 gtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaa 28537527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 30899668 - 30899765
Alignment:
Q  220 tgttgtgaattcaaactaataata-ataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||| ||   || ||| |||||||||||||| ||||||| |||||||||||||||    
T  30899668 tgttgtgaattcaaac-aataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 2630087 - 2630132
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaa 2630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 3880165 - 3880276
Alignment:
Q  271 aaaaggaagtagtaatcaatgagtaaagtagtct-caagcaacaacaaa--cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaa 367  Q
    |||||||||| |||||||||   |||||| |||| ||| ||||||||||  |||||||| |||||||| | |||||||| || |  ||||||||||||||    
T  3880165 aaaaggaagtggtaatcaatagataaagt-gtcttcaatcaacaacaaaaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaagcaa 3880263  T
Q  368 caaagataagcaa 380  Q
     ||||||||||||    
T  3880264 taaagataagcaa 3880276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 379
Target Start/End: Original strand, 14520079 - 14520203
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 352  Q
    |||||||| ||  ||||||||| |||||||||| ||||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  14520079 agatgtgtggagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaa 14520177  T
Q  353 acataatcaaagcaacaaagataagca 379  Q
     ||||| |||||| |||||||||||||    
T  14520178 gcataaacaaagc-acaaagataagca 14520203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 12084361 - 12084298
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  12084361 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 12084298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 17004144 - 17004081
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| | |||||||| || |  |||||||||||||| ||||||||||||    
T  17004144 aaacagacctaaatctaagtgt-aagcaacaccacaagcataatcaaagcaaaaaagataagcaa 17004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 376
Target Start/End: Original strand, 4956015 - 4956157
Alignment:
Q  237 aataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaac---aacaaacagacctagatctaa 333  Q
    |||||| ||||||||| ||||||||  ||| ||  |||||||||| ||||||||||| || | || ||||||||||   ||||||| || |||||| |||    
T  4956015 aataatcataccaatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaacaacaaacggatctagatttaa 4956114  T
Q  334 gtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
    || |||||||||| || | ||||||||||||||||| ||||||    
T  4956115 gtgtgaagcaacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 377
Target Start/End: Original strand, 37781673 - 37781836
Alignment:
Q  220 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaaca--- 316  Q
    |||||||||||||||| |||||| |||  |||| |||||||| |||| ||  ||| |||||||| || |||||||||||||   |||| ||||||||       
T  37781673 tgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatgagtaaagtatcatcaatcaacaacatca 37781772  T
Q  317 ---aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 377  Q
       || |||||||||||||||| |||||||||| || |  |||| |||||||||||||||||||    
T  37781773 acaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataag 37781836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 873809 - 873731
Alignment:
Q  220 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaag 298  Q
    ||||||||||| |||| |||||| | ||||||| ||||||||||| ||||  || |||||| |||||||||||| ||||    
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 42234579 - 42234512
Alignment:
Q  271 aaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaaacagacctagatctaagtatgaag 341  Q
    |||| ||||||||||||||  | ||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  42234579 aaaaagaagtagtaatcaa--attaaagtagtttcaagcaacaac-aacatacctagatctaagtgtgaag 42234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 5112103 - 5112148
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||| ||| ||||||||||||||||  ||||||||||||||||||    
T  5112103 aaagggagtggtaatcaatgagtaaacaagtctcaagcaacaacaa 5112148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 16630865 - 16630802
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||| |||||||||||||| | |||||||| || |  ||||||||||| |||||||||||||||    
T  16630865 aaacaaacctagatctaagtgtaaagcaacaccacaagcataatcaaag-aacaaagataagcaa 16630802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 25862207 - 25862143
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  25862207 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 25862143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 38152623 - 38152560
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  38152623 aaacagacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataagcaa 38152560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 21156296 - 21156415
Alignment:
Q  276 gaagtagtaatcaatgagtaaagtagtctcaagcaac------aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 369  Q
    ||||||||||||||||||||||||||||| |||||||      |||||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  21156296 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 21156395  T
Q  370 aagataagcaagaagggaag 389  Q
    |||||||| |||||||||||    
T  21156396 aagataagaaagaagggaag 21156415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 373
Target Start/End: Original strand, 29100033 - 29100137
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaac---aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 368  Q
    |||||||||||||||||||||||| | ||||||||||||||   ||||||| ||  ||||||||| | ||||| |||| || | ||||| |||||||||     
T  29100033 aaaggaagtagtaatcaatgagtagaatagtctcaagcaacaacaacaaactgagatagatctaactgtgaagaaacaccacaaacatattcaaagcaag 29100132  T
Q  369 aaaga 373  Q
    |||||    
T  29100133 aaaga 29100137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 30710028 - 30709903
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 352  Q
    |||||||| ||  ||||||||| |||||||||| ||||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  30710028 agatgtgtggagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtttagagcaacaccataa 30709930  T
Q  353 acataatcaaagcaacaaagataagcaa 380  Q
     |||||||||||| ||||||||||||||    
T  30709929 gcataatcaaagc-acaaagataagcaa 30709903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 34482074 - 34482174
Alignment:
Q  283 taatcaatgagtaaagtagtctcaagcaac------aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
    ||||||||||| |||||||| |||||||||      |||||||||||||||||| |||| ||||| |||| ||   |||||| ||||||||| |||||||    
T  34482074 taatcaatgagcaaagtagtttcaagcaacatcaacaacaaacagacctagatcaaagtgtgaagtaacaccacgtacataaccaaagcaaccaagataa 34482173  T
Q  377 g 377  Q
    |    
T  34482174 g 34482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 8370724 - 8370599
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 352  Q
    |||||||| ||  ||||||||  |||||||||| ||||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  8370724 agatgtgtggagtaaaggaagaggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaa 8370626  T
Q  353 acataatcaaagcaacaaagataagcaa 380  Q
     |||||||||||| ||||||||||||||    
T  8370625 gcataatcaaagc-acaaagataagcaa 8370599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 4387155 - 4387110
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||| ||||||||||||||||||||||||| |  ||||||||||||    
T  4387155 aaagaaagtagtaatcaatgagtaaagtagccataagcaacaacaa 4387110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 25516843 - 25516888
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||| |||||||||||||| ||||||||||||||||  ||||||||    
T  25516843 aaagaaagtagtaatcaataagtaaagtagtctcaaataacaacaa 25516888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 25929617 - 25929556
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 377  Q
    ||||| ||||| |||||||| |  ||||||| || | |||||||||||||||||||||||||    
T  25929617 aaacaaacctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataag 25929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 8126613 - 8126677
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||| ||||| |||||||| |  ||||||| || || |||||||||||||| ||||||||||||    
T  8126613 aaacatacctaaatctaagtgtagagcaacaccacactcataatcaaagcaataaagataagcaa 8126677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 26298900 - 26298964
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  26298900 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 26298964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 27026857 - 27026920
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  27026857 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 27026920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 47924106 - 47924028
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaaa--cagacctagatctaagt 335  Q
    |||||||| ||  ||||||||| ||||||||||  |||||| ||||| |||||||||||||  |||||||||||||||||    
T  47924106 agatgtgtggagtaaaggaagtggtaatcaatggataaagt-gtctccaagcaacaacaaaaacagacctagatctaagt 47924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 16388259 - 16388355
Alignment:
Q  220 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||||||||||| ||| |||||| | ||| ||| ||||||||||||| ||  |||| |||||||||||||||| ||||||||||||||||| ||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgata-aacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaa 16388355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 16388760 - 16388625
Alignment:
Q  219 atgttgtgaattcaaactaataataataccaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaag---------c 309  Q
    ||||||||||||||||| |||||| | | ||||| ||||||||||||| ||  |||   |||||||||||||||||||||||||||||||         |    
T  16388760 atgttgtgaattcaaacaaataatcacatcaata-aacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaac 16388662  T
Q  310 aacaacaaacagacctagatctaagtatgaagcaaca 346  Q
    |||||||||||||||||||| || || ||||||||||    
T  16388661 aacaacaaacagacctagatgtatgtgtgaagcaaca 16388625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 28770964 - 28770899
Alignment:
Q  311 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
    |||||||| |||||||||||||||| |||||||||| || |  |||||||||||||| ||| ||||    
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataa 28770899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 3277908 - 3277976
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 377  Q
    |||||||||| ||| |||||||||||| ||||||||||  | | ||||| ||||||||| |||||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataag 3277976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 2869886 - 2869815
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||| ||||||| |||||||| |  ||||||| || |  |||| ||||||||||||||||||||||    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaacaaagataagcaa 2869815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 2869932 - 2869887
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    |||||||||||| |||||||||||||||||  |||| |||||||||    
T  2869932 aaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaa 2869887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 8039972 - 8040036
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  8039972 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 8040036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 31055954 - 31056018
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  31055954 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 31056018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 380
Target Start/End: Original strand, 85535 - 85659
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtct-caagcaacaac----aaacagacctagatctaagtatgaagcaacatcagaca 353  Q
    |||||||||||  ||||||||| |||||||||| ||||||| |||| |||||||||||    |||||||||||||||||||| |  |||||||||| |      
T  85535 agatgtgtagagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaataaaacagacctagatctaagtgtagagcaacatcacaag 85633  T
Q  354 cataatcaaagcaacaaagataagcaa 380  Q
    ||||| |||||| ||||||||||||||    
T  85634 cataaccaaagc-acaaagataagcaa 85659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 7493328 - 7493264
Alignment:
Q  246 accaatagaacttagatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagca 310  Q
    ||||||| ||||  ||||||| ||  |||||||||||||||||||| ||||||||||||||||||    
T  7493328 accaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagca 7493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 11771855 - 11771921
Alignment:
Q  310 aacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 376  Q
    ||||||||||| ||||||||||||||||||||||||| || |  |||||  ||| ||||||||||||    
T  11771855 aacaacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataa 11771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 32916304 - 32916355
Alignment:
Q  295 aaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 346  Q
    |||||||||||||||||||||||| | || ||||| |||||||||| |||||    
T  32916304 aaagtagtctcaagcaacaacaaataaacttagatataagtatgaaccaaca 32916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 28387895 - 28387955
Alignment:
Q  317 aacagacctagatctaagtatgaagcaacatcagaca--cataatcaaagcaacaaagataa 376  Q
    ||||||||||||||||||| |||||||| |||| |||  |||||| ||||||||||||||||    
T  28387895 aacagacctagatctaagtgtgaagcaaaatca-acaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 34477417 - 34477335
Alignment:
Q  302 tctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaag 384  Q
    ||||||||||||||||| ||| |||||| ||||  |||| |||||  | | ||||| ||||||||| ||||||||| ||||||    
T  34477417 tctcaagcaacaacaaagagatctagatttaagggtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaag 34477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 5990793 - 5990748
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||||||||||||||||  ||||||||  ||||||||||||||    
T  5990793 aaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaa 5990748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 28307424 - 28307469
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||||||||||||||||||| |||||| |||||| ||| ||||    
T  28307424 aaaggaagtagtaatcaatgagtcaagtagcctcaagtaacgacaa 28307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 4696781 - 4696717
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||| || |||||||| |  ||||||| || | ||||||||||||||| ||||||||||||    
T  4696781 aaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataagcaa 4696717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 26403415 - 26403351
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  26403415 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 26403351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 9185397 - 9185284
Alignment:
Q  271 aaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 365  Q
    |||||||||| |||||||||| ||||||| ||||| ||||||||||||    |||||||||||||||||| |  || |||| || |  ||||| ||||||    
T  9185397 aaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacagacctagatctaagtgtagagaaacaccacaagcataaacaaagc 9185299  T
Q  366 aacaaagataagcaa 380  Q
    || ||||||||||||    
T  9185298 aataaagataagcaa 9185284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 9190242 - 9190129
Alignment:
Q  271 aaaaggaagtagtaatcaatgagtaaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 365  Q
    |||||||||| |||||||||| ||||||| ||||| ||||||||||||    ||| |||||||||||||| |  ||||||| || |  ||||| ||||||    
T  9190242 aaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacaaacctagatctaagtgtagagcaacaccacaagcataaacaaagc 9190144  T
Q  366 aacaaagataagcaa 380  Q
    || ||||||||||||    
T  9190143 aataaagataagcaa 9190129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 55860 - 55923
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||||||||||||||  ||||||| || |  |||||||||||| ||||||||||||||    
T  55860 aaacagacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataagcaa 55923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 2647888 - 2647817
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataagcaa 2647817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 28617475 - 28617420
Alignment:
Q  259 agatgtgtagataaaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaa 314  Q
    |||||||| ||  ||||||||| |||||||||||||||||||| |||||| |||||    
T  28617475 agatgtgtggagcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaa 28617420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 23575564 - 23575488
Alignment:
Q  310 aacaacaaacagacctagatctaagtatgaagcaacatcaga--cacataatcaaagcaacaaagataagcaagaag 384  Q
    ||||||||||| |||||||||||||| ||||||| | |||||  || | || ||||||||| |||||||| ||||||    
T  23575564 aacaacaaacaaacctagatctaagtgtgaagcatcgtcagaggcataaaaccaaagcaactaagataagaaagaag 23575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 4796852 - 4796788
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  4796852 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 4796788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 29159715 - 29159779
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  29159715 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 29159779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 10634 - 10705
Alignment:
Q  309 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 10705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 14548 - 14627
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaag-----caacaacaaacagacctagatctaagtatgaagcaaca 346  Q
    |||||||||  |||||||| || ||||||||||||||     |||||||||||| ||||| |||||||||||||| ||||    
T  14548 aaaggaagtgttaatcaattagcaaagtagtctcaagcaacacaacaacaaacatacctatatctaagtatgaagaaaca 14627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 29724 - 29679
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||||| |||||||||||||||||||  ||||| |||||||||    
T  29724 aaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaa 29679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 43120 - 43165
Alignment:
Q  272 aaaggaagtagtaatcaatgagtaaagtagtctcaagcaacaacaa 317  Q
    ||||||||| |||||||||||||||||||  ||||| |||||||||    
T  43120 aaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaa 43165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 2404 - 2468
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  | ||||| || |  |||||||||||||| ||||||||||||    
T  2404 aaacagacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataagcaa 2468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 5595 - 5659
Alignment:
Q  316 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 380  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| ||||||||||||    
T  5595 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaa 5659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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