View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18142_high_5 (Length: 350)
Name: NF18142_high_5
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18142_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 51740922 - 51741219
Alignment:
| Q |
15 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740922 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
51741021 |
T |
|
| Q |
115 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacagttgattacatctgatagtacgaaaaacg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51741022 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacaattgattacatctgatagtacgaaaaacg |
51741121 |
T |
|
| Q |
215 |
ttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51741122 |
ttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcaga |
51741219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 10201720 - 10201863
Alignment:
| Q |
15 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
114 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10201720 |
tcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggtt |
10201819 |
T |
|
| Q |
115 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagg |
158 |
Q |
| |
|
||||| || ||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
10201820 |
cttaggcatgcaccttgttctgtcggtgtaattatagaaagagg |
10201863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 10201914 - 10202013
Alignment:
| Q |
209 |
aaaacgttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcat |
308 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| || || |||||| | |||||||||||| | ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
10201914 |
aaaatgttgcaacacttttttttggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcat |
10202013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University