View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18142_high_7 (Length: 317)

Name: NF18142_high_7
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18142_high_7
NF18142_high_7
[»] chr1 (25 HSPs)
chr1 (1-307)||(8281319-8281626)
chr1 (51-216)||(35109418-35109583)
chr1 (70-257)||(10997026-10997216)
chr1 (63-241)||(918336-918514)
chr1 (77-263)||(22819506-22819693)
chr1 (1-230)||(32736864-32737090)
chr1 (151-245)||(40816668-40816762)
chr1 (80-192)||(17345424-17345536)
chr1 (89-263)||(47098660-47098833)
chr1 (159-263)||(11031309-11031412)
chr1 (89-263)||(47102674-47102850)
chr1 (166-263)||(16124349-16124445)
chr1 (167-245)||(13598567-13598645)
chr1 (167-245)||(47703787-47703865)
chr1 (207-246)||(6354261-6354300)
chr1 (166-245)||(29651979-29652058)
chr1 (198-241)||(48382346-48382389)
chr1 (149-245)||(9022758-9022852)
chr1 (176-274)||(25116523-25116623)
chr1 (118-266)||(32889558-32889703)
chr1 (163-242)||(15864726-15864805)
chr1 (166-245)||(19073094-19073173)
chr1 (166-245)||(19120984-19121063)
chr1 (176-263)||(27104236-27104322)
chr1 (166-238)||(2210624-2210697)
[»] chr2 (24 HSPs)
chr2 (22-295)||(28770576-28770847)
chr2 (1-245)||(2869544-2869787)
chr2 (51-281)||(18674216-18674447)
chr2 (21-295)||(3278025-3278294)
chr2 (151-245)||(14698861-14698955)
chr2 (111-205)||(15903782-15903876)
chr2 (1-245)||(2837881-2838124)
chr2 (151-245)||(31056194-31056288)
chr2 (166-263)||(21630111-21630207)
chr2 (167-263)||(34389018-34389113)
chr2 (151-245)||(33118286-33118380)
chr2 (114-263)||(41586385-41586532)
chr2 (166-263)||(17865371-17865467)
chr2 (166-263)||(33528459-33528555)
chr2 (63-245)||(39482994-39483178)
chr2 (167-263)||(13569496-13569591)
chr2 (1-190)||(1345448-1345635)
chr2 (228-263)||(11049487-11049522)
chr2 (51-202)||(27139853-27140004)
chr2 (129-184)||(35397639-35397694)
chr2 (167-245)||(8390001-8390079)
chr2 (167-245)||(10707104-10707182)
chr2 (146-184)||(27149207-27149245)
chr2 (167-263)||(23078306-23078400)
[»] chr4 (21 HSPs)
chr4 (1-274)||(34670488-34670756)
chr4 (53-307)||(873307-873562)
chr4 (1-263)||(37781865-37782126)
chr4 (151-242)||(42599429-42599520)
chr4 (129-263)||(5112366-5112499)
chr4 (61-248)||(39593789-39593974)
chr4 (111-211)||(1983187-1983286)
chr4 (44-156)||(8114679-8114790)
chr4 (49-184)||(18912276-18912411)
chr4 (77-263)||(39774140-39774325)
chr4 (167-245)||(24333978-24334056)
chr4 (166-263)||(5269035-5269131)
chr4 (166-263)||(10047547-10047643)
chr4 (151-263)||(25861868-25861980)
chr4 (167-245)||(3793932-3794010)
chr4 (118-263)||(3777667-3777811)
chr4 (166-263)||(6743250-6743345)
chr4 (204-241)||(42684974-42685011)
chr4 (128-215)||(36175236-36175321)
chr4 (53-102)||(4956232-4956281)
chr4 (129-245)||(18377489-18377604)
[»] chr6 (10 HSPs)
chr6 (54-268)||(1114931-1115147)
chr6 (66-257)||(99222-99412)
chr6 (111-245)||(14521784-14521919)
chr6 (8-263)||(24435806-24436058)
chr6 (43-257)||(33721399-33721613)
chr6 (89-245)||(31979602-31979757)
chr6 (118-245)||(31936695-31936820)
chr6 (151-263)||(5572078-5572188)
chr6 (53-228)||(30517998-30518172)
chr6 (166-245)||(21801196-21801275)
[»] scaffold0016 (1 HSPs)
scaffold0016 (5-257)||(102334-102584)
[»] chr8 (15 HSPs)
chr8 (48-281)||(31513148-31513375)
chr8 (77-245)||(7493025-7493193)
chr8 (118-245)||(19752246-19752372)
chr8 (77-263)||(3051197-3051382)
chr8 (198-241)||(33503697-33503740)
chr8 (25-186)||(9054748-9054907)
chr8 (151-263)||(4696443-4696554)
chr8 (77-202)||(5990456-5990581)
chr8 (1-201)||(8863521-8863719)
chr8 (149-245)||(28307711-28307807)
chr8 (167-245)||(26403081-26403159)
chr8 (70-242)||(14601233-14601405)
chr8 (166-245)||(5702332-5702412)
chr8 (1-245)||(6127224-6127468)
chr8 (77-191)||(34477128-34477239)
[»] chr5 (15 HSPs)
chr5 (51-248)||(30899918-30900114)
chr5 (117-263)||(28832374-28832519)
chr5 (114-202)||(2630345-2630433)
chr5 (77-263)||(11181667-11181852)
chr5 (118-245)||(31300447-31300574)
chr5 (89-241)||(42127266-42127419)
chr5 (151-263)||(19588896-19589007)
chr5 (167-245)||(17003811-17003889)
chr5 (129-263)||(24553362-24553495)
chr5 (111-241)||(34842714-34842843)
chr5 (151-245)||(10281901-10281997)
chr5 (113-256)||(5611255-5611398)
chr5 (112-187)||(6741964-6742039)
chr5 (89-183)||(33030854-33030948)
chr5 (167-263)||(11916807-11916901)
[»] chr7 (19 HSPs)
chr7 (89-245)||(5817122-5817278)
chr7 (80-235)||(3047335-3047489)
chr7 (89-263)||(20284177-20284351)
chr7 (89-263)||(23402848-23403022)
chr7 (118-263)||(9185009-9185153)
chr7 (118-263)||(9189842-9189986)
chr7 (118-245)||(2580508-2580635)
chr7 (89-263)||(9235417-9235591)
chr7 (115-241)||(45685601-45685727)
chr7 (129-245)||(29159933-29160050)
chr7 (151-243)||(2647551-2647643)
chr7 (165-245)||(4796520-4796600)
chr7 (166-262)||(49091829-49091924)
chr7 (166-245)||(56115-56194)
chr7 (45-243)||(761219-761416)
chr7 (165-263)||(46516140-46516237)
chr7 (1-138)||(28617184-28617319)
chr7 (159-245)||(33332302-33332388)
chr7 (149-202)||(27984633-27984686)
[»] scaffold0002 (1 HSPs)
scaffold0002 (66-281)||(14748-14964)
[»] chr3 (25 HSPs)
chr3 (44-234)||(44658345-44658536)
chr3 (89-245)||(3328198-3328355)
chr3 (130-266)||(8126761-8126895)
chr3 (1-245)||(18552726-18552967)
chr3 (118-263)||(40592606-40592750)
chr3 (89-263)||(3323515-3323689)
chr3 (63-295)||(5366113-5366348)
chr3 (151-244)||(25795931-25796024)
chr3 (77-195)||(21353639-21353757)
chr3 (1-307)||(29100162-29100472)
chr3 (166-263)||(47923728-47923824)
chr3 (113-256)||(21156542-21156685)
chr3 (151-263)||(24694990-24695101)
chr3 (166-245)||(1736145-1736224)
chr3 (166-245)||(48438382-48438461)
chr3 (117-263)||(1417315-1417460)
chr3 (167-245)||(3715843-3715921)
chr3 (51-163)||(4386851-4386963)
chr3 (151-211)||(40844801-40844861)
chr3 (207-238)||(10274589-10274620)
chr3 (166-245)||(30709630-30709709)
chr3 (167-245)||(47649737-47649815)
chr3 (151-245)||(25929237-25929332)
chr3 (151-263)||(26299138-26299250)
chr3 (167-263)||(8370313-8370407)
[»] scaffold0006 (2 HSPs)
scaffold0006 (167-245)||(5852-5930)
scaffold0006 (167-263)||(2661-2756)
[»] scaffold0078 (1 HSPs)
scaffold0078 (111-245)||(23643-23777)
[»] scaffold0076 (1 HSPs)
scaffold0076 (5-102)||(15983-16078)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 8281319 - 8281626
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  8281319 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaataactctctgatccactatgataagaatgatacaaatatgttacaagaaat 8281418  T
Q  101 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 200  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8281419 taacataatcgctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagtttt 8281518  T
Q  201 tttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa-ttcc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  8281519 tttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaagttct 8281618  T
Q  300 ctcctttg 307  Q
    ||||||||    
T  8281619 ctcctttg 8281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 35109583 - 35109418
Alignment:
Q  51 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 150  Q
    ||||||| ||| |||||||||||||  |||||||||| |||||||||||||| | ||   ||||||||||||||||   ||||||||| ||| | || ||    
T  35109583 agctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaa 35109484  T
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 216  Q
    ||||| | |||||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||    
T  35109483 gtcacacacactcacaatgaatcctacgagaaaatactaaaggaagcttttttatccttcctctaa 35109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 10997026 - 10997216
Alignment:
Q  70 ataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatg 169  Q
    |||||| |||||||||||||||||||||||||||| ||   | | ||||| ||||||  |||||||||| ||||| || ||||||||| |||||||  ||    
T  10997026 ataagagtgatacaaatatgttacaagaaattaacttaaaagataacaaataacaaaccctaatttctacccatttttcaagtcaccctcactcacgttg 10997125  T
Q  170 aatccaaagagaaaa-cactaaaggaagatttttt--attcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 257  Q
    ||||| || |||||| |||||||||||| ||||||  ||  |||||||||||| || |||||| |||||||||||| ||||| ||||||||    
T  10997126 aatcctaaaagaaaaacactaaaggaagcttttttttatcattcctctaatgacatttcactatccaaggtgtttaaaaatgtttcccaac 10997216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 918514 - 918336
Alignment:
Q  63 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtc-acccgcac 161  Q
    ||||||||||||| ||||||||| || ||||||||||||| | ||    |||||||||||||||   ||||||||| ||||| || || || || |  ||    
T  918514 cactatgataagagtgatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatttttcaattccactcaaac 918415  T
Q  162 tcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
     |||||||||||| ||||||||||| ||| ||||| ||||  || ||||||||||||||||||||||||||||| |||||    
T  918414 ccacaatgaatcctaagagaaaacaataatggaagcttttg-atgcttcctctaatgagatctcactacccaagatgttt 918336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 22819506 - 22819693
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||||  |||||||||||||| | | || |||||||||||| ||    ||||||||| ||||| || ||||||||| ||||| |||||||||| |    
T  22819506 tgatacaaatgagttacaagaaattagctttttagctcacaaagaataagacataatttctaaccatttttcaagtcacccacactctcaatgaatccta 22819605  T
Q  177 agag--aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||  ||||||| |||||||| ||||| || |||||  |  ||| || | |||||||||||||||||| |||| |||||||| |||||    
T  22819606 agagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatgtaactacccaaggtgtttac-aatgtttcccaacccaaga 22819693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32737090 - 32736864
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    ||||| ||| ||| ||||| |||||||||||||| |||  || ||||||   ||||| |||  |||||||| |   ||||||||| | ||||||| ||||    
T  32737090 attgtgtactcagatcgatccaaaatgacctactctgggagagagagaaa--ctctctgatcaactatgatgaaggtgatacaaagaggttacaaaaaat 32736993  T
Q  101 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 200  Q
    || | ||   | ||| ||||||||||  |||||||||| ||||| || |||||| |  |||||||||||||||| |||||||||| ||||||||||   |    
T  32736992 tagcttaaaagttcataaagaacaaaccctaatttctacccatttttcaagtcatcgacactcacaatgaatcctaagagaaaaccctaaaggaag-gat 32736894  T
Q  201 tttattcttcctctaatgagatctcactac 230  Q
    || ||  |||||||||||||||||||||||    
T  32736893 ttgatcattcctctaatgagatctcactac 32736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 40816762 - 40816668
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  40816762 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 17345536 - 17345424
Alignment:
Q  80 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 179  Q
    ||||||| || |||||||||||| ||||   || |||||||||||||  |||||||||| ||||| |||||||||||| |||||  ||||||||  ||||    
T  17345536 tacaaatgtgctacaagaaattagcataagagcccacaaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaaga 17345437  T
Q  180 gaaaacactaaag 192  Q
    |||||||| ||||    
T  17345436 gaaaacacaaaag 17345424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 47098833 - 47098660
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||| ||||| ||||||| || |||| |||||||    
T  47098833 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatt-ttcacatcacccacactctcaatgaaacctaagaaaaaacac 47098735  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47098734 aaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 11031412 - 11031309
Alignment:
Q  159 cactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 257  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||| || |||||  ||||||   ||||||||||| |||||||||||||| ||||||||    
T  11031412 cactcacaatgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaa--ctcactacccacggtgtttacaaatgtttcccaac 11031315  T
Q  258 acaaga 263  Q
     |||||    
T  11031314 ccaaga 11031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 47102850 - 47102674
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctat--ccattatttaagtcacccgcactcacaatgaatccaaagagaaaac 185  Q
    |||||||||||||||| |||  ||  ||||| |||||| | |||||||||||  ||||| || |  |||| | ||||| |||||||||| |||| |||||    
T  47102850 gttacaagaaattaacttataagcatacaaaagaacaagtcctaatttctatacccatttttcatatcactcacactctcaatgaatcctaagaaaaaac 47102751  T
Q  186 actaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    || |||| ||| ||||| || |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47102750 acaaaagaaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47102674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 16124445 - 16124349
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  16124445 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 16124349  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 13598567 - 13598645
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  13598567 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 47703865 - 47703787
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||||||  ||||  |  ||| |||||||||||||||||||||||||    
T  47703865 atgaatcctaagagaaaacacaaaaggaagtttttttatcattccaatggtgaaatctcactacccaaggtgtttacaa 47703787  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 6354300 - 6354261
Alignment:
Q  207 cttcctctaatgagatctcactacccaaggtgtttacaaa 246  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  6354300 cttcctctaatgagatctcactacccaaagtgtttacaaa 6354261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 29651979 - 29652058
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| |||||||||||| |||||||  ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  29651979 aatgaatcctaagagaaaacacaaaaggaaactttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 48382389 - 48382346
Alignment:
Q  198 ttttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  48382389 ttttttatccttcctttaatgagatctcactacccaaggtgttt 48382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 9022852 - 9022758
Alignment:
Q  149 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||| || |||||||||||||||| ||||||||  ||| ||||||| |||||||| |||||  |  ||| ||||||||||  |||||||||||||    
T  9022852 aagtcaaccacactcacaatgaatcctaagagaaa--actcaaggaagcttttttatccttccaatggtgaaatctcactacgaaaggtgtttacaa 9022758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 25116623 - 25116523
Alignment:
Q  176 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactaccc-aaggtgtttacaaatggttcccaacacaagaaa-aaactctc 273  Q
    ||||||||||||||||| ||  ||||| || ||||   |||||| |||||||||||| || ||||||||||||| |||||||| ||| ||| ||||||||    
T  25116623 aagagaaaacactaaagaaatttttttaatccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctc 25116524  T
Q  274 a 274  Q
    |    
T  25116523 a 25116523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 32889558 - 32889703
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| ||| ||||  |||| |  |||||  |  |    
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaagaag-cttttgaaccttccaatggt 32889655  T
Q  218 gagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaa 266  Q
    || ||||||||||||||||||||||| |||| |||||||| ||| ||||    
T  32889656 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaaaaaa 32889703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 15864726 - 15864805
Alignment:
Q  163 cacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 242  Q
    |||||||||||| |||| |||||| || || |||  |||| ||  || ||||||||||||||||||||||||| ||||||    
T  15864726 cacaatgaatcctaagaaaaaacaatagagaaagcattttgatcatttctctaatgagatctcactacccaagatgttta 15864805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 19073094 - 19073173
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19073094 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 19120984 - 19121063
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19120984 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19121063  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 27104322 - 27104236
Alignment:
Q  176 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||||||| |||||||| ||||| ||||||||  |  ||| |||||||||||||||||| |||  |||| |||||||| |||||    
T  27104322 aagagaaaacacaaaaggaagctttttgattcttccaatggtgaaatctcactacccaaggtgctta-taatgtttcccaacccaaga 27104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 2210624 - 2210697
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaag-attttttattcttcctctaatgagatctcactacccaaggtg 238  Q
    ||||||| | ||||||||||| ||||| ||  |||||| ||  || ||||||||||||||||||||||||||||    
T  2210624 aatgaattctaagagaaaacaataaagaaaacatttttgatcatttctctaatgagatctcactacccaaggtg 2210697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 28770847 - 28770576
Alignment:
Q  22 aaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaaga 121  Q
    ||||||||||||| ||||||| |||| |  |||||||||| | ||| ||||||||||||||||| || ||||||||||||| | ||   |||||||||||    
T  28770847 aaaatgacctactctggaggatagagca--gctctccgatcctctacgataagaatgatacaaagatattacaagaaattagcttaaaagctcacaaaga 28770750  T
Q  122 acaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgaga 221  Q
    ||||| ||||||||||| ||||| || ||||||  | ||||| |||||||||| ||||||||||||||||||||  |||||||| ||||  |||||||||    
T  28770749 acaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaacttttttatccttcagctaatgaga 28770650  T
Q  222 tctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 295  Q
    ||||||||||||||||||||||||||| || |||||  |||||||||| |||| ||||||  | ||||||||||    
T  28770649 tctcactacccaaggtgtttacaaatgttttccaaccaaagaaaaaacactcaccaaagacactcaaccctaaa 28770576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2869787 - 2869544
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    ||||||||||||||||| | ||| |||||||||| | | ||| ||||  ||||||||| || ||||| ||| | | |||||||||   ||||||||||||    
T  2869787 attgtttacccagttcggtccaatatgacctactctaggggagagag--tagctctccaatccactaagatgaaagtgatacaaaggagttacaagaaat 2869690  T
Q  101 taacatattcgctcacaaagaacaaattc-taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatt 199  Q
    || | ||   ||||||||||||||||  | ||||||||| ||||| || ||||||||| ||||| |||||||||| ||||||||||||||| ||||| ||    
T  2869689 tagcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactctcaatgaatcctaagagaaaacactaacggaagctt 2869590  T
Q  200 ttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||| ||||||||  |   || |||||||||||||| ||||||||||    
T  2869589 tttgattcttccaatggcgaaatctcactacccaatgtgtttacaa 2869544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 281
Target Start/End: Complemental strand, 18674447 - 18674216
Alignment:
Q  51 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 150  Q
    |||||||||||  ||||||| |||| |||||| ||   ||||||||||||||   ||   ||||||||||||||||   ||||||||||||||| || ||    
T  18674447 agctctccgatctactatgacaagagtgataccaaggggttacaagaaattagtttaaaagctcacaaagaacaaaccataatttctatccatttttcaa 18674348  T
Q  151 gtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 249  Q
    ||||||| ||||||  ||||||||  ||||||||||| ||||||||| ||||| || ||| |  |||||| |||||||| | |||||||||||| ||||     
T  18674347 gtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt-caataatgaaatctcactgctcaaggtgtttacgaatgt 18674249  T
Q  250 ttcccaacacaagaa-aaaactctcatcaaaga 281  Q
    |||||||| ||||||  ||||||||| ||||||    
T  18674248 ttcccaacccaagaattaaactctcaccaaaga 18674216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 3278025 - 3278294
Alignment:
Q  21 caaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaag 120  Q
    |||||||||||||| ||||||| |||| ||  | || ||||  |||||||| ||||||||| ||| | |||| ||||||||| | ||    ||||||| |    
T  3278025 caaaatgacctactatggaggagagagcat--cacttcgatctactatgatgagaatgata-aaagaggttataagaaattagcttaaaacctcacaa-g 3278120  T
Q  121 aacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgag 220  Q
    |||||||||  ||||||   |||| || || |||| | ||||||||||||| || |||||||||| |||||||||| ||||| || | |||| ||||||     
T  3278121 aacaaattccgatttcttctcatttttcaattcactcacactcacaatgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataatgaa 3278220  T
Q  221 atctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 295  Q
    ||||||||| |||||||||||||||||| || ||||| |||| | || |||||||||| ||| | ||||||||||    
T  3278221 atctcactatccaaggtgtttacaaatgttttccaacccaag-agaatctctcatcaacgatactcaaccctaaa 3278294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 14698955 - 14698861
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  || ||| |||||||||||||||||||||||||    
T  14698955 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 15903876 - 15903782
Alignment:
Q  111 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttat 205  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| ||||| |||||||||| | |||||||||| |||| ||  ||||||||    
T  15903876 gctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactctcaatgaatcctatgagaaaacacaaaagaaatcttttttat 15903782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2838124 - 2837881
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| | |  ||||| || |||||  || | | ||||||||||  ||||||||||||    
T  2838124 attgttgacccagttcggtccaatatgacctactctgggggagagagcaca--tctccaatccactaaaatgaaagtgatacaaatgagttacaagaaat 2838027  T
Q  101 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 200  Q
    ||  | |   |||||||||||||| |  ||||||| |  ||||| || | ||||||| |  || |||||||||| |||||||||||||||||||| ||||    
T  2838026 tagtacaagagctcacaaagaacacaacctaatttttgcccatttttcatgtcacccaccttctcaatgaatcctaagagaaaacactaaaggaatattt 2837927  T
Q  201 tttattcttcctctaatgaga-tctcactacccaaggtgtttacaa 245  Q
    ||||| |||||  |  ||| | |||||||| |||||||||||||||    
T  2837926 tttatccttccaatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 31056194 - 31056288
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  ||| |||||||||||||||||||||||||    
T  31056194 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaa 31056288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 21630111 - 21630207
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  21630111 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 21630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 34389018 - 34389113
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  34389018 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 34389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 33118286 - 33118380
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| ||||| |||||||||  |||||||||||| |||||||| ||||| || |||||  |   || |||||||||||||||||||||||||    
T  33118286 gtcaccctcactctcaatgaatcttaagagaaaacacaaaaggaagctttttgatccttccaatggcgaaatctcactacccaaggtgtttacaa 33118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 41586532 - 41586385
Alignment:
Q  114 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctc 213  Q
    ||||||||||||| | ||||||||| | ||| || ||||||| |  ||||| |||| |||| ||||||||||| ||||| ||  ||||| ||||| |  |    
T  41586532 cacaaagaacaaactttaatttctacctatttttcaagtcactc--actcagaatggatcctaagagaaaacattaaagaaaactttttgattctcctcc 41586435  T
Q  214 taatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    || | | ||||||||||||||||||||||||| || || ||||| |||||    
T  41586434 tagtaaaatctcactacccaaggtgtttacaactgttttccaacccaaga 41586385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 17865371 - 17865467
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  17865371 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 17865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 33528555 - 33528459
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||| |||||||| |||| |||||||| |||||    
T  33528555 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttac-aatgtttcccaacccaaga 33528459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 245
Target Start/End: Original strand, 39482994 - 39483178
Alignment:
Q  63 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcac 161  Q
    ||||||||| | |||| ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| |||||  ||| ||||||| |||    
T  39482994 cactatgatgaaaatgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccatt--ttatgtcacccacac 39483091  T
Q  162 tcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    || ||||   |||||| |||||||||||| |||||||| ||||| ||  ||||  |  ||| |||||||||||||||||||||||||    
T  39483092 tctcaataatgaatcctaagagaaaacacaaaaggaagttttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 39483178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 13569496 - 13569591
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| ||||||||||||  |||| |||||||| |||||    
T  13569496 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgttta-taatgtttcccaacccaaga 13569591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1345635 - 1345448
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcact-atgataagaatgatacaaatatgttacaagaaa 99  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| |   ||||||||| |||| | ||| | | ||||||||||  ||| |||||||    
T  1345635 attgttgacccagttcggtccaatatgacctactctgggggagagagcac--ctctccgatccacttaagatgaaagtgatacaaatgagttgcaagaaa 1345538  T
Q  100 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaa 190  Q
    ||| || ||  ||||||||| |||| |  |||||||||| ||||| || | ||||||| ||||| |||||||||  || ||||||||||||    
T  1345537 ttagcacatgagctcacaaa-aacacaacctaatttctacccatttttcatgtcacccccactctcaatgaatcataaaagaaaacactaa 1345448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 263
Target Start/End: Complemental strand, 11049522 - 11049487
Alignment:
Q  228 tacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11049522 tacccaaggtgtttacaaatgtttcccaacacaaga 11049487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 27139853 - 27140004
Alignment:
Q  51 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 150  Q
    |||||||| ||||||||||| || | ||||||||| |||||||| ||||||||  |    |||||||||| |||||  ||||||||||  |||  || ||    
T  27139853 agctctccaattcactatgaaaatagtgatacaaaaatgttacaggaaattaaatttaaagctcacaaagtacaaaccctaatttctacacatatttcaa 27139952  T
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 202  Q
    |||||  | || || ||||||||| || |||||||| ||||| ||| |||||    
T  27139953 gtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagcttttt 27140004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 35397639 - 35397694
Alignment:
Q  129 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaa 184  Q
    |||||||||||||||| || ||||||||| || || |||||||||| |||||||||    
T  35397639 ctaatttctatccatttttcaagtcacccacaatctcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 8390079 - 8390001
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| | |||||| ||||| ||||||||  |  | | ||||||||| |||||||||||||||    
T  8390079 atgaatcctaagagaaaacacaagaggaagctttttgattcttccaatggtaaaatctcactatccaaggtgtttacaa 8390001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 10707182 - 10707104
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  10707182 atgaatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttacaa 10707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 27149245 - 27149207
Alignment:
Q  146 tttaagtcacccgcactcacaatgaatccaaagagaaaa 184  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  27149245 tttaagtcacccacactcacaatgaatcctaagagaaaa 27149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 23078400 - 23078306
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||| || ||||||| |||| |||||||| ||||  || |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23078400 atgaaccctaagagaagacacaaaaggaagcttttg-atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34670756 - 34670488
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    |||||||| |||||||| | |||||||||||||| || |||| | || |  |||||| ||| ||||||||||||   | |||||| | ||||||||||||    
T  34670756 attgtttatccagttcggtccaaaatgacctactatgaaggagatagca--gctctctgatccactatgataag---ggtacaaagaggttacaagaaat 34670662  T
Q  101 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 200  Q
    || | || | |||||||||||||||||  ||||||||||||||| || ||||||| | |||||||||||||||| ||||||||||||||||| ||  |||    
T  34670661 tagcttaatagctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaacactaaagaaaacttt 34670562  T
Q  201 tttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctca 274  Q
    |  || ||||||||||||||||||||||||||||| || ||||||||| ||| |||| ||||||||||||||||    
T  34670561 tagatccttcctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaaaaactctca 34670488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 873562 - 873307
Alignment:
Q  53 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 152  Q
    ||||||||| ||||||||| |||||||||| |||| |||||||||||||||| ||   |||| |||| ||||||| ||||||||||  |||  ||  |||    
T  873562 ctctccgatccactatgattagaatgataccaataggttacaagaaattaacttaaaagctcgcaaataacaaatcctaatttctactcatatttcgagt 873463  T
Q  153 cacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttc 252  Q
    ||||| || ||||| | | ||  |||||||||||| ||| |||| ||||| || || ||||||||||||||||||||| ||||||||||||||||| | |    
T  873462 cacccacagtcacattaagtcttaagagaaaacacaaaatgaagctttttgatcctccctctaatgagatctcactactcaaggtgtttacaaatgttcc 873363  T
Q  253 ccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa-ttccctcctttg 307  Q
    ||||| |||||||||| | ||| ||||||  | |||||||||| |||||| |||||    
T  873362 ccaacccaagaaaaaattatcaccaaagacactcaaccctaaagttcccttctttg 873307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 37781865 - 37782126
Alignment:
Q  1 attgtttacccagttcgatgcaaa-atgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaa 99  Q
    ||||||||||||||||| |  ||| ||||||||||| ||||   ||||| || |||||| || |||||| |||| | ||||||||| | |||||||||||    
T  37781865 attgtttacccagttcggtttaaatatgacctacttcggag---agagagtaactctccaatccactataataaaagtgatacaaagaggttacaagaaa 37781961  T
Q  100 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagat 198  Q
    ||| | ||    ||||||||||||||||  ||||||||| ||||| || ||||||||  |||||  || ||||||  |||||||||||||||| ||   |    
T  37781962 ttagcttaaaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagact 37782061  T
Q  199 tttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||| ||||||||  |||||| |||||||||||||||||||||||||||| || ||||| |||||    
T  37782062 ttttgattcttccaataatgaaatctcactacccaaggtgtttacaaatgttttccaacccaaga 37782126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 42599520 - 42599429
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 242  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| |||||  |  ||| ||||||||||||||||||||||    
T  42599520 gtcacccgcactctcaatgaatcctaagagaaaacacaaaaggaagtttttttatccttccaatggtgaaatctcactacccaaggtgttta 42599429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 5112366 - 5112499
Alignment:
Q  129 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 228  Q
    ||||||| || | ||| |||||||||| | |||||||||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||    
T  5112366 ctaatttgtacctattttttaagtcactcacactcacaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcact 5112465  T
Q  229 acccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||||||||| |||| |||||||| |||||    
T  5112466 acccaaggtgtttac-aatgtttcccaacccaaga 5112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 39593789 - 39593974
Alignment:
Q  61 ttcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgca 160  Q
    ||||||||||||||| ||||||||||| ||||||||||||||   ||    |||||||||||  ||  |||||||||| || ||  | ||||||| |  |    
T  39593789 ttcactatgataagagtgatacaaataagttacaagaaattagtttacaaactcacaaagaatcaac-ctaatttctacccctttgtcaagtcactcaaa 39593887  T
Q  161 ctcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 248  Q
    | |||||||||||| |||||||| |||| ||||||| |||||  |  |||||||||||||||||||| |  |||||||||||||||||    
T  39593888 cccacaatgaatcctaagagaaaccactcaaggaagctttttggtcattcctctaatgagatctcac-attcaaggtgtttacaaatg 39593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 1983286 - 1983187
Alignment:
Q  111 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttc 210  Q
    ||||||||||||||||   |||||||||||| || || ||||||||  ||||| |||||||||| |||||||||| | |||||||| |||||||| ||||    
T  1983286 gctcacaaagaacaaaacataatttctatcc-tttttcaagtcacctacactctcaatgaatcctaagagaaaacccaaaaggaagcttttttatccttc 1983188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 8114790 - 8114679
Alignment:
Q  44 agagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccat 143  Q
    |||||| | |||||| || ||||||||||||||||||| ||||| ||||||||||| | || |||   |||||||||||||||  ||||||| |||||||    
T  8114790 agagaacaactctccaatccactatgataagaatgatataaataggttacaagaaa-tcacttataatctcacaaagaacaaaccctaatttgtatccat 8114692  T
Q  144 tatttaagtcacc 156  Q
    | || ||||||||    
T  8114691 ttttcaagtcacc 8114679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 18912411 - 18912276
Alignment:
Q  49 atagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattt 148  Q
    |||||||||| || ||||||||||||| ||||||||| | | ||||||||||||   ||    |||||||||||||||  |||| || |||||||| ||     
T  18912411 atagctctccaatccactatgataagagtgatacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttttc 18912312  T
Q  149 aagtcacccgcactcacaatgaatccaaagagaaaa 184  Q
    ||||||| |  || |||||||||||| |||||||||    
T  18912311 aagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 263
Target Start/End: Complemental strand, 39774325 - 39774140
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaag-aacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 175  Q
    ||||||||||| |||||||||||||| | ||   |||||||||| |||||   |||||||||| ||| | || | ||||| | ||||| ||||||||||     
T  39774325 tgatacaaataggttacaagaaattagcttaaaagctcacaaagaaacaagacctaatttcta-ccaattttcatgtcactcacactctcaatgaatccc 39774227  T
Q  176 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| || |||||||| ||||| ||  ||||  |  ||| | ||||||||||||||||||||| |||| |||||||| |||||    
T  39774226 aagagaaaatacaaaaggaagctttttgatcattccaatggtgaaaactcactacccaaggtgtttac-aatgtttcccaactcaaga 39774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 24333978 - 24334056
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  24333978 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 5269131 - 5269035
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| ||||||||||||| |||| |||||||| |||||    
T  5269131 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttac-aatgtttcccaacccaaga 5269035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 10047547 - 10047643
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||| ||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  10047547 aatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 10047643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 25861980 - 25861868
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 249  Q
    ||||||| ||||| |||||||||| ||||||||| ||| |||||||| ||||| || |||||  |  ||| |||||||||| |||||||||||| ||||     
T  25861980 gtcacccacactctcaatgaatcctaagagaaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactactcaaggtgtttac-aatgt 25861882  T
Q  250 ttcccaacacaaga 263  Q
    |||||||| |||||    
T  25861881 ttcccaacccaaga 25861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 3794010 - 3793932
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| ||||| |||||| |||||||| ||||| || ||| || |  ||| |||||||||||||||||||||||||    
T  3794010 atgaatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaa 3793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 3777667 - 3777811
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctcta 215  Q
    ||||||||  ||||||||||| ||||| | |  ||||||| | ||||||||  |||||| ||||||||| || |||||||| ||||| ||  ||||  |     
T  3777667 aagaacaagatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaatacaaaaggaagctttttgatcattccaatg 3777764  T
Q  216 atgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  3777765 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3777811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 6743345 - 6743250
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||| |||||||||||||||| |||| |||||||| |||||    
T  6743345 aatgaatcctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaaga 6743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 42685011 - 42684974
Alignment:
Q  204 attcttcctctaatgagatctcactacccaaggtgttt 241  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42685011 attcttcctctaatgagatctcactatccaaggtgttt 42684974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 36175236 - 36175321
Alignment:
Q  128 tctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctcta 215  Q
    ||||||||||| ||||| | |||||||| |  ||||||||||||||| | ||||||||| ||||||||| | ||| || |||||||||    
T  36175236 tctaatttctacccattttctaagtcacac--actcacaatgaatcctatgagaaaacattaaaggaagttgtttgatccttcctcta 36175321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 4956232 - 4956281
Alignment:
Q  53 ctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 102  Q
    |||||| || ||||||||||||||||||| ||| | ||||||||||||||    
T  4956232 ctctccaatccactatgataagaatgataaaaagaggttacaagaaatta 4956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 18377489 - 18377604
Alignment:
Q  129 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 228  Q
    |||||||||| ||||| || | ||||||| |||| ||||||||||| |||| ||||||| ||| |||| ||||| || |||||  |  | | |||||| |    
T  18377489 ctaatttctacccatt-ttcatgtcacccacacttacaatgaatcctaagaaaaaacacaaaatgaagctttttgatccttccaatggtaaaatctcatt 18377587  T
Q  229 acccaaggtgtttacaa 245  Q
    |||||||| ||||||||    
T  18377588 acccaaggggtttacaa 18377604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 1115147 - 1114931
Alignment:
Q  54 tctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtc 153  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||   ||||| ||| ||||||  |||||||||||||||| || |||||    
T  1115147 tctccaatccactatgataagaatgatacaaataggttacaagaaatcaacttaaaagctcaaaaataacaaaccctaatttctatccatttttcaagtc 1115048  T
Q  154 acccgcactcacaatgaatccaaagagaaaacactaaaggaa--gattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggtt 251  Q
    |||| ||||||||||||||   |||||||||||| |||||||    |||||| | ||||| ||||||||||||||| | ||| | |||| ||||||| ||    
T  1115047 acccacactcacaatgaatattaagagaaaacacaaaaggaaacttttttttctccttcccctaatgagatctcaccatccatgttgttaacaaatgttt 1114948  T
Q  252 cccaacacaagaaaaaa 268  Q
    ||||||  |||||||||    
T  1114947 cccaaccaaagaaaaaa 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 257
Target Start/End: Original strand, 99222 - 99412
Alignment:
Q  66 tatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcac 165  Q
    |||||| |||||||||| | || |||||||||||||| | ||   ||||||| |||||||| | ||||||||| ||||| ||||||| || | |||||||    
T  99222 tatgatgagaatgatacgattaagttacaagaaattagcttagaagctcacagagaacaaactttaatttctacccatt-tttaagttactcacactcac 99320  T
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 257  Q
    ||||||||| | ||||||| || |||||||| ||||| ||  || |||||||||||| | |||||| |||||||||||| ||| || |||||    
T  99321 aatgaatcctatgagaaaataccaaaggaagctttttaatcatttctctaatgagatataactacctaaggtgtttacagatgttttccaac 99412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 14521784 - 14521919
Alignment:
Q  111 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttc 210  Q
    |||||||||||||| |  ||||||||||  |||| || | ||||||| ||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  14521784 gctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactctcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  211 ctctaatgaga-tctcactacccaaggtgtttacaa 245  Q
    |  |  ||| | ||||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 24436058 - 24435806
Alignment:
Q  8 acccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacata 107  Q
    |||||||||||| ||| |||||||||| | | ||| |||| |  || ||||||| ||||| ||| | |||| |||||||   ||||||||||||| | ||    
T  24436058 acccagttcgatccaatatgacctactctaggggagagagca--gccctccgatccactaggatgaaaatgttacaaatgaattacaagaaattagctta 24435961  T
Q  108 ttcgctcacaaagaa-caaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttatt 206  Q
    |  ||| ||||| || |||   |||||||||| ||||| ||||  |||||| || ||| ||||||||| |||||||||||| |||||||| ||||| ||     
T  24435960 taagcttacaaaaaaacaagacctaatttctacccatt-tttatatcacccacattcataatgaatcctaagagaaaacacaaaaggaagctttttgatc 24435862  T
Q  207 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  24435861 cttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 24435806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 257
Target Start/End: Complemental strand, 33721613 - 33721399
Alignment:
Q  43 aagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatcca 142  Q
    ||||||| | ||||| ||| ||||||||||||||| ||||||| | ||||||||||||||   ||    |||| ||||||||||  |||||||    |||    
T  33721613 aagagaacaactctctgatccactatgataagaattatacaaagaggttacaagaaattagtttaaaaactcataaagaacaaaacctaattttccccca 33721514  T
Q  143 ttatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
    || |||| ||||| | |||||  || ||||||| |||||||||||||||||| || ||||| ||  ||||  |||||| ||||||||| | |||||||||    
T  33721513 ttttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatcattccaataatgaaatctcacta-caaaggtgttt 33721415  T
Q  242 acaaatggttcccaac 257  Q
    ||||||| ||||||||    
T  33721414 acaaatgtttcccaac 33721399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 245
Target Start/End: Original strand, 31979602 - 31979757
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||||| |||  ||| ||||| ||||||   |||||||||| ||||| |||  ||||||| ||||| |||||||||| ||||||||||||    
T  31979602 gttacaagaaattaacttataagcttacaaaagaacaagacctaatttctacccatt-tttgtgtcacccacactctcaatgaatcctaagagaaaacac 31979700  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
     ||||||||  |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  31979701 aaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 31979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||||| |||||||||| ||||| || |  |||||| ||||| |||||||||| ||||||||||||  || |||| ||||| || |||||  |  |    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatggt 31936792  T
Q  218 gagatctcactacccaaggtgtttacaa 245  Q
    || |||||||||||||||||||||||||    
T  31936793 gaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 5572188 - 5572078
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 250  Q
    ||||||| ||||| |||||||||| |||||||||||| ||||||||  |||| ||  ||||  || ||| ||||||||||||||||||||||| |||| |    
T  5572188 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaag-cttttgatcattccaatagtgaaatctcactacccaaggtgtttac-aatgtt 5572091  T
Q  251 tcccaacacaaga 263  Q
    ||||||| |||||    
T  5572090 tcccaacccaaga 5572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 30518172 - 30517998
Alignment:
Q  53 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 152  Q
    ||||| ||| ||||||||||||| ||||||||| | |||||| |||| |||| ||   | ||||||||||||||   ||||||||| | ||| || ||||    
T  30518172 ctctctgatccactatgataagagtgatacaaagaggttacatgaaactaacttaaaagttcacaaagaacaaaccttaatttctacctatttttcaagt 30518073  T
Q  153 cacccgcactcac-aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 228  Q
     |||| ||||||| ||||||| |  |||||||||||||||||||| ||||| || |||||  |||||| ||||||||    
T  30518072 tacccacactcacaaatgaat-cttagagaaaacactaaaggaag-tttttgatccttccaataatgaaatctcact 30517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 21801275 - 21801196
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  21801275 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 102584 - 102334
Alignment:
Q  5 tttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaac 104  Q
    ||||||||||||||| |||||| ||||| | |||| ||  ||||| | ||||| ||| ||| ||||||||| ||||||||| | |||||||||||||| |    
T  102584 tttacccagttcgattcaaaattacctagtgtggaaga--gagaacaactctctgatccacaatgataagagtgatacaaagaggttacaagaaattatc 102487  T
Q  105 atattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttta 204  Q
     ||   ||||||||| ||||||  |||||||||| ||||| || ||||||| | |||||| ||| ||| | ||||||||||||||||||| | ||||| |    
T  102486 ttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcataataaattcgaagagaaaacactaaaggatgctttttga 102387  T
Q  205 ttcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 257  Q
    | ||||||||||| | |||| |||  ||||||||||| |||||| || |||||    
T  102386 tccttcctctaataaaatcttacttaccaaggtgttttcaaatgttttccaac 102334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 48 - 281
Target Start/End: Complemental strand, 31513375 - 31513148
Alignment:
Q  48 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatt 147  Q
    ||||| |||| ||| ||||||||||||||| ||  ||| | ||||||| |||||| | |||||    ||||||||||||  |||||||||| | ||| ||    
T  31513375 aatagttctctgatccactatgataagaattatgaaaagaggttacaaaaaattagcttattc----acaaagaacaaac-ctaatttctacctatt-tt 31513282  T
Q  148 taagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaat 247  Q
      ||||| || |||||||||||||||| ||||||||||||||||| |   |||||||| ||||||||||||| |||||||||  ||||||||||||||||    
T  31513281 cgagtcatccacactcacaatgaatcctaagagaaaacactaaag-atttttttttatccttcctctaatgaaatctcactattcaaggtgtttacaaat 31513183  T
Q  248 ggttcccaacacaagaaa-aaactctcatcaaaga 281  Q
    | ||| |||| ||||||| ||||||||||| ||||    
T  31513182 gtttctcaacccaagaaataaactctcatcgaaga 31513148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 7493193 - 7493025
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||| | |||| ||||||||||||||   ||||||| ||||||||  |||||||||| |  || || ||||||||| ||||| |||| ||||| |    
T  7493193 tgatacaaagaagttataagaaattaacataaaagctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactctcaataaatccta 7493094  T
Q  177 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||| |||||||||||||||| ||||| || ||||   |  ||| |||||||||||||||||||||||||    
T  7493093 agaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  | ||    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatgat 19752274  T
Q  218 gagatctcactacccaaggtgtttacaa 245  Q
    || |||||||||||||||||||||||||    
T  19752273 gaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 3051197 - 3051382
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||||  |||||||||||||| ||||   ||||||||||||||||   ||||||||| ||||| || | |||||   ||||| |||||||||| |    
T  3051197 tgatacaaatgagttacaagaaattagcataagagctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactctcaatgaatccta 3051296  T
Q  177 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||| ||| |||||||| ||||| ||  ||||  |  ||| ||||||||||||||| ||||||| |||| |||||||| |||||    
T  3051297 agagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaaga 3051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 33503740 - 33503697
Alignment:
Q  198 ttttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33503740 ttttttattcttcctctaatgagatctcactacccaaggtgttt 33503697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 9054907 - 9054748
Alignment:
Q  25 atgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaaca 124  Q
    |||||||||| ||||||| |||| |  ||||||  || ||||| ||| | | |||||||||   |||||||||||||| | ||   || |||||||||||    
T  9054907 atgacctactctggaggagagagca--gctctctaatccactaagatgaaagtgatacaaagtggttacaagaaattagcttaaaagcgcacaaagaaca 9054810  T
Q  125 aattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaaca 186  Q
    || ||||||||||| ||||| || ||||||| | ||||| |||||||||| |||||||||||    
T  9054809 aaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 4696554 - 4696443
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 250  Q
    ||||||| ||||| || ||||||| |||||||||||| |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |    
T  4696554 gtcacccacactctcattgaatcctaagagaaaacacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaaggtgtttac-aatgtt 4696456  T
Q  251 tcccaacacaaga 263  Q
    ||||||| |||||    
T  4696455 tcccaacccaaga 4696443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 202
Target Start/End: Complemental strand, 5990581 - 5990456
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||| |||||||||||||||| | ||   ||||||||||||||    || ||||  | ||||| || ||||||||| ||||  |||||||||| |    
T  5990581 tgatacaaagatgttacaagaaattagcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactttcaatgaatccta 5990482  T
Q  177 agagaaaacactaaaggaagattttt 202  Q
    |||||||||||||||| ||| |||||    
T  5990481 agagaaaacactaaagaaagcttttt 5990456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8863719 - 8863521
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataa-gaatgatacaaatatgttacaagaaa 99  Q
    ||||||| ||||||||| | |||||| ||||||| ||  ||||| ||  || ||||  ||| |||||||| || || ||||||||| | |||||||||||    
T  8863719 attgttttcccagttcggttcaaaataacctactctgatggaaatag--taactctttgatccactatgagaaagagtgatacaaagaggttacaagaaa 8863622  T
Q  100 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagat 198  Q
    ||||| ||   |||||||  |||||||   ||||||||| ||||| || ||||||| | ||| || || |||||| |||||||||||| |||||||||||    
T  8863621 ttaacttaaaagctcaca--gaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaacattaaaggaagat 8863524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 28307711 - 28307807
Alignment:
Q  149 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| ||||| || ||||||| || ||||||||| |||| ||| |||||||| |||||  |  ||| |||||||||||||||||||| ||||    
T  28307711 aagtcacccacactctcactgaatcctaaaagaaaacacaaaagaaagcttttttatccttccaattgtgaaatctcactacccaaggtgttaacaa 28307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 26403159 - 26403081
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||  |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  26403159 atgaatcataagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 14601233 - 14601405
Alignment:
Q  70 ataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatg 169  Q
    |||| ||||||||||| | |||||| ||||||| | |||  || ||||||||||  || ||||||| || | ||| || ||||||| |  || ||| |||    
T  14601233 ataataatgatacaaagaggttacacgaaattagcgtataagcccacaaagaacgtatcctaatttttacctatttttcaagtcactcaaacgcacgatg 14601332  T
Q  170 aatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 242  Q
    ||||| | ||||||||| ||||| ||| ||||  ||| || ||||||| |||||||| || |||| |||||||    
T  14601333 aatcctatgagaaaacaataaagaaagcttttagattatttctctaataagatctcattagccaatgtgttta 14601405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 5702412 - 5702332
Alignment:
Q  166 aatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| ||||||||| ||| |||||||| ||||| ||  ||||  |  ||| |||||||||||||||||||||||||    
T  5702412 aatgaatcctaagagaaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 5702332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6127224 - 6127468
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    |||||| || ||||||| | ||| |||||||| ||||| |  ||||||  |||||||| || ||||||||| | | || ||||||   ||||||||||||    
T  6127224 attgttgactcagttcggtccaatatgacctaatttgggg--aagagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 6127321  T
Q  101 taacatattcgctcac-aaagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaag 196  Q
    || | |||  ||| || |||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| |||| |||    
T  6127322 tagcttataagcttacaaaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaagaaag 6127419  T
Q  197 attttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
     ||||| || |||||  |  ||| ||||||||||||||  |||||||||    
T  6127420 ctttttgatccttccaatggtgaaatctcactacccaaaatgtttacaa 6127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 34477239 - 34477128
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||| | |||| ||||||||||| ||    ||||||||||||||   |||||||| | ||||| || ||||||| |  |  ||||||||||||||    
T  34477239 tgatacaaagaggttaaaagaaattaacttacaaactcacaaagaacaa---ctaatttcgacccatttttcaagtcactcaaatccacaatgaatccaa 34477143  T
Q  177 agagaaaacactaaa 191  Q
    |||||||||| ||||    
T  34477142 agagaaaacaataaa 34477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 30899918 - 30900114
Alignment:
Q  51 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 150  Q
    |||||||||||  | ||||| |||| ||||||||| | |||||||||||||| | ||   |||||||||||||||| |||| ||||||   ||| || ||    
T  30899918 agctctccgatctattatgagaagagtgatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttctactgatttttcaa 30900017  T
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 248  Q
    | ||| |  || ||||| |||||| | ||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  30900018 gccactcaaacccacaaagaatccta-gagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgtttataaatg 30900114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 263
Target Start/End: Original strand, 28832374 - 28832519
Alignment:
Q  117 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 216  Q
    ||||||||| |||||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |      
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgg 28832473  T
Q  217 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  28832474 tgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 28832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 2630345 - 2630433
Alignment:
Q  114 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 202  Q
    |||||||||||||  ||||||| ||| |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  2630345 cacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactcacaatgaatcctaagagaaaacactaaaggaagcttttt 2630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 77 - 263
Target Start/End: Complemental strand, 11181852 - 11181667
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 175  Q
    ||||||||||  |||||||||||||| | ||   |||| |||| ||||||   |||||||||| ||||| || | ||||||| ||||||||||||||||     
T  11181852 tgatacaaatgagttacaagaaattagcctaaaagctctcaaatgaacaagacctaatttctacccatt-ttcatgtcacccacactcacaatgaatcct 11181754  T
Q  176 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||||||| |||||||| ||||| || |||||  |  ||| || |||||||||||||||||||| |||| |||||||| |||||    
T  11181753 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttac-aatgtttcccaacccaaga 11181667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 31300574 - 31300447
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | |||||||||| |||||  | |  |||||| ||||| |||||||||| |||||||||||| ||||||||  |||| || |||||  |  |    
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggt 31300475  T
Q  218 gagatctcactacccaaggtgtttacaa 245  Q
    || |||||||||||||||||||||||||    
T  31300474 gaaatctcactacccaaggtgtttacaa 31300447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 42127419 - 42127266
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | ||| |||||| ||||| || |  |||||| ||||| |||||||||| ||||||||||||    
T  42127419 gttacaagaaattagcttataagcttacaaaagaacaagtcctactttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac 42127320  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
     |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||    
T  42127319 aaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 19588896 - 19589007
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 250  Q
    ||||||| || || |||||||||| |||||||||||| |||||||||||||| || |||||  |  ||| |||||||| |||||| ||||||| |||| |    
T  19588896 gtcacccacaatctcaatgaatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttac-aatgtt 19588994  T
Q  251 tcccaacacaaga 263  Q
    ||||||| |||||    
T  19588995 tcccaacccaaga 19589007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 17003889 - 17003811
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  17003889 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 24553495 - 24553362
Alignment:
Q  129 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 228  Q
    |||||||||| ||||| ||||  | |||| |||||  ||||||| | |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||    
T  24553495 ctaatttctacccattttttatatgacccacactcttaatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcact 24553396  T
Q  229 acccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||||||||| |||| |||||||| |||||    
T  24553395 acccaaggtgtttac-aatgtttcccaacccaaga 24553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 34842714 - 34842843
Alignment:
Q  111 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttc 210  Q
    |||||| ||||||| || ||||||||||  |||| || |||||||    || |||||||||| | ||||||| ||||||||| || | ||| ||  ||||    
T  34842714 gctcaccaagaacatatcctaatttctactcatttttcaagtcactaaaacccacaatgaattctaagagaacacactaaagaaa-actttgtaaccttc 34842812  T
Q  211 ctctaatgagatctcactacccaaggtgttt 241  Q
    | |||||||||||||||||||||||||||||    
T  34842813 ccctaatgagatctcactacccaaggtgttt 34842843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 10281901 - 10281997
Alignment:
Q  151 gtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| ||||||||||  |||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  10281901 gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 5611255 - 5611398
Alignment:
Q  113 tcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcc 211  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    ||||||  ||||| ||| ||||||||||||||||| ||| ||||| ||  || |    
T  5611255 tcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactcataaatgattcctaagagaaaacactaaagcaagctttttgatcttttc 5611353  T
Q  212 tctaatgagatctcactacccaaggtgtttacaaatggttcccaa 256  Q
      |||||| |||||| || | ||||||||||| |||| |||||||    
T  5611354 aataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 5611398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 6741964 - 6742039
Alignment:
Q  112 ctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||||  ||||||||||  |||| || ||||||||| ||||| |||||||||| |||| |||||||    
T  6741964 ctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactctcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 33030948 - 33030854
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaa 183  Q
    |||||||||||||| | ||   ||||||||||||||||   ||||||||| ||||| || ||||||| | ||||| |||||||||| ||||||||    
T  33030948 gttacaagaaattagcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 11916901 - 11916807
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  11916901 atgaaccctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 11916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 5817278 - 5817122
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacact 188  Q
    |||||||||||||  ||||   ||||||||||||||||  |||||||||||||||| || ||||||| | ||||| |||||||||| |||| |||||||     
T  5817278 gttacaagaaatttgcataagagctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaacaca 5817179  T
Q  189 aaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| ||||| || |||||  |  ||| |||||||| |||||||| |||||||    
T  5817178 aaaggaagctttttgatccttccaatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 3047335 - 3047489
Alignment:
Q  80 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 179  Q
    |||||||  |||||||||||| ||| ||   |||||||||||||||   |||||||||| ||||| |||||||||||| ||||| |||||||||  ||||    
T  3047335 tacaaatgagttacaagaaatcaacttaaaagctcacaaagaacaagacctaatttctacccatt-tttaagtcacccacactctcaatgaatcttaaga 3047433  T
Q  180 gaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaag 235  Q
     ||||||| |||||||| ||||| || |||||  | |||| |||||||||||||||    
T  3047434 taaaacacaaaaggaagctttttgatccttccaatgatgaaatctcactacccaag 3047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 263
Target Start/End: Original strand, 20284177 - 20284351
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| || || || |  |||||| ||||| |||||||||| ||||||||||||    
T  20284177 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccttttttcatatcacccacactctcaatgaatcctaagagaaaacac 20284276  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  20284277 aaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 20284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 23403022 - 23402848
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||| | ||||| |||||||||| ||||||||||||    
T  23403022 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaacac 23402923  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23402922 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23402848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 9185153 - 9185009
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9185054  T
Q  218 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9185053 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 9189986 - 9189842
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9189887  T
Q  218 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9189886 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9189842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 217  Q
    |||||||| | ||| |||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  |    
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggt 2580607  T
Q  218 gagatctcactacccaaggtgtttacaa 245  Q
    || |||||||||||||||||||||||||    
T  2580608 gaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 9235591 - 9235417
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||||||||| ||| |||||| ||||||||||||    
T  9235591 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccgcactctcaacgaatcctaagagaaaacac 9235492  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     |||||||| ||||| || ||| |  |  ||| || |||||| ||||||||||||| |||| |||||||| |||||    
T  9235491 aaaaggaagctttttgatccttgcaatggtgaaatatcactatccaaggtgtttac-aatgtttcccaacccaaga 9235417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 45685727 - 45685601
Alignment:
Q  115 acaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctct 214  Q
    ||||||||||||   ||||||||||||||| |||||||||| |  | || |||||||||| |||||||||||  |||| ||| |||||||| ||| || |    
T  45685727 acaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagtttttttatcctttcttt 45685628  T
Q  215 aatgagatctcactacccaaggtgttt 241  Q
     ||||||||| |||| | |||||||||    
T  45685627 gatgagatctgactatcaaaggtgttt 45685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 29159933 - 29160050
Alignment:
Q  129 ctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctca 226  Q
    |||||||||| ||||| |||  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||    
T  29159933 ctaatttctacccatt-tttgtgtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctca 29160031  T
Q  227 ctacccaaggtgtttacaa 245  Q
    |||||||||||||||||||    
T  29160032 ctacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 2647643 - 2647551
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 243  Q
    ||||||| ||||| |||||||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||| ||||    
T  2647643 gtcacccacactctcaatgaatcctaagagaaaacacaaaatgaagttttttgatccttccaatggtgaaatctcactacccaaggtgcttac 2647551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 4796600 - 4796520
Alignment:
Q  165 caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  4796600 caatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 49091829 - 49091924
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaag 262  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||| | |||| |||||||| ||||    
T  49091829 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgttttc-aatgtttcccaacccaag 49091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 56115 - 56194
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  56115 aatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 243
Target Start/End: Original strand, 761219 - 761416
Alignment:
Q  45 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccatt 144  Q
    |||| |||||||||||| |||||||  | |||||| ||||||| ||||||| |||| | |  |   |||||||||||| |||  |||||||||| |||||    
T  761219 gagactagctctccgatccactatgtaaggaatgacacaaataggttacaataaatgagctcaaaagctcacaaagaaaaaacactaatttctacccatt 761318  T
Q  145 atttaagtcacccgcactcacaatgaatcca---aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 241  Q
     || ||||||     |||||||||| ||||    |||||  ||||||||| |||  ||||| || |||||||||||||||||||||||| ||| ||| ||    
T  761319 tttcaagtcat----actcacaatgcatcctcctaagaggtaacactaaatgaaactttttgatccttcctctaatgagatctcactactcaaagtgctt 761414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 46516237 - 46516140
Alignment:
Q  165 caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||||  |||||||||||| ||| |||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  46516237 caatgaatcttaagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 46516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28617319 - 28617184
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    ||||||||||||||||| | ||| |||||||||| ||| ||  |||||  |||||||| || ||||| ||| | | ||||||||    ||||||||||||    
T  28617319 attgtttacccagttcggtccaatatgacctactctggggg--agagagcagctctccaatccactaagatgaaagtgatacaatggggttacaagaaat 28617222  T
Q  101 taacatattcgctcacaaagaacaaattctaatttcta 138  Q
    || | ||   ||||||||||||||||  ||||||||||    
T  28617221 tagcttaaaagctcacaaagaacaaaacctaatttcta 28617184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 33332388 - 33332302
Alignment:
Q  159 cactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||| |||||| ||| |||||||||||| || ||||| ||||| || |||||  |  ||| ||||||||||||||| |||||||||    
T  33332388 cactctcaatgattcctaagagaaaacacaaagggaagctttttgatccttccaatggtgaaatctcactacccaagatgtttacaa 33332302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 27984633 - 27984686
Alignment:
Q  149 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 202  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||| |||||    
T  27984633 aagtcacccacactcacaatgaatccttagagaaaatactaaatgaaggttttt 27984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 281
Target Start/End: Original strand, 14748 - 14964
Alignment:
Q  66 tatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcac 165  Q
    |||||||||| ||||||||| | ||||| |||||||| | ||   ||||||||||||| ||  ||| || ||| | ||| || ||||||||| |||||||    
T  14748 tatgataagagtgatacaaagaggttacgagaaattagcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcac 14847  T
Q  166 aa--tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||  ||||||| |||||||||||||||||||   ||||| || |||||  |||| | ||||||| ||| ||||| |||||||||| |||||||| ||| |    
T  14848 aaagtgaatcctaagagaaaacactaaagga--gtttttgatgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaa 14945  T
Q  264 aa-aaactctcatcaaaga 281  Q
    || ||||||||| ||||||    
T  14946 aataaactctcaccaaaga 14964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 44658536 - 44658345
Alignment:
Q  44 agagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccat 143  Q
    ||||||||  |||| ||| ||||| ||||||| ||||||||| ||||||||| |||||| |  | |  ||||||||||| | |||||||||||||||  |    
T  44658536 agagaataattctcagatccactaggataagagtgatacaaaaatgttacaataaattagctcactaactcacaaagaagatattctaatttctatctgt 44658437  T
Q  144 tatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt-attcttcctctaatgagatctcactacccaa 234  Q
      || ||||||| |  || |||||| ||||| ||||||||| | ||||| |||||||||| || ||| ||||||||||||||||| ||||||    
T  44658436 atttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttttttatcctttctctaatgagatctcaccacccaa 44658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 3328355 - 3328198
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||| ||||| ||||| |||| ||||||||||||    
T  3328355 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgtatcctaagagaaaacac 3328256  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
     |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3328255 aaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 266
Target Start/End: Original strand, 8126761 - 8126895
Alignment:
Q  130 taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcacta 229  Q
    ||||||||| ||||| |||  ||||||| ||||| |||||||||  |||||||||||| ||| |||| ||||| || |||||  | |||| |||||||||    
T  8126761 taatttctacccatt-tttgtgtcacccacactctcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcacta 8126859  T
Q  230 cccaaggtgtttacaaatggttcccaacacaagaaaa 266  Q
    |||||||||||||| |||| |||||||| ||||||||    
T  8126860 cccaaggtgtttac-aatgtttcccaacccaagaaaa 8126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 18552967 - 18552726
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 100  Q
    |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   ||||||||||||    
T  18552967 attgttgacccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaat 18552870  T
Q  101 taacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatt 199  Q
    || | |||  ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| |||||||||||| |||||||| ||    
T  18552869 tagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagttt 18552772  T
Q  200 ttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||| || |||||  |  ||| |||||||||||||||||||||||||    
T  18552771 tttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 40592750 - 40592606
Alignment:
Q  118 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctcta 215  Q
    ||||||||| ||||||||||| ||||| | |  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |||||  |     
T  40592750 aagaacaaaatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40592653  T
Q  216 atgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  40592652 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 40592606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 3323689 - 3323515
Alignment:
Q  89 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 187  Q
    |||||||||||||| | |||  ||| ||||| |||||| |  ||||||||| ||||| || |  |||||| ||||| |||||||| | ||||||||||||    
T  3323689 gttacaagaaattagcttataagcttacaaaagaacaagtcataatttctacccattgttcatatcacccacactctcaatgaattctaagagaaaacac 3323590  T
Q  188 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  3323589 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3323515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 295
Target Start/End: Complemental strand, 5366348 - 5366113
Alignment:
Q  63 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcact 162  Q
    ||||||||| | | ||||||||| | |||||||||||||| | ||    ||||||| ||| ||||  ||||||||| || || ||  |||||||| ||||    
T  5366348 cactatgatgaaagtgatacaaagaggttacaagaaattatcttaaaatctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacact 5366249  T
Q  163 cacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat-gagatctcactacccaaggtgtttacaaatggttcccaacaca 260  Q
     | || ||||||| ||| ||||||||||||||||  ||||  || |||||  | || || |||| ||||||||||||||||||||||| || ||||| ||    
T  5366248 aataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttccaactca 5366149  T
Q  261 agaaa-aaactctcatcaaagatgcccaaccctaaa 295  Q
    ||||| ||||||||| ||||||  | ||||||||||    
T  5366148 agaaataaactctcaccaaagactctcaaccctaaa 5366113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 25795931 - 25796024
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttaca 244  Q
    ||||||| ||||| |||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||||    
T  25795931 gtcacccacactctcaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttaca 25796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 21353639 - 21353757
Alignment:
Q  77 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 176  Q
    ||||||||||  |||||||||||||| || |   |||||||||||||| |  |||||||||| ||||| || | | ||| | |||| ||||||||||  |    
T  21353639 tgatacaaatgagttacaagaaattagcacaagagctcacaaagaacacaacctaatttctacccatttttcatgccactcacacttacaatgaatctta 21353738  T
Q  177 agagaaaacactaaaggaa 195  Q
    |||||||||||||||||||    
T  21353739 agagaaaacactaaaggaa 21353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29100162 - 29100472
Alignment:
Q  1 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataa-gaatgatacaaatatgttacaagaaa 99  Q
    ||||||||||||||||| | |||||| ||| ||| |  ||| ||||||  ||||||||  | ||||||||||| || ||||||||| | |||| ||||||    
T  29100162 attgtttacccagttcggtccaaaattacccactat--agggaagagagcagctctccattccactatgataaagagtgatacaaagaggttataagaaa 29100259  T
Q  100 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagat 198  Q
    ||| | ||    |||||||||||||||  ||||||||||  | || || ||||||||  ||||||  ||||||||  |||||| || ||||||||||  |    
T  29100260 ttagcttaaaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagataatactaaaggaaact 29100359  T
Q  199 tttttattcttcctctaatgagatctcactacccaaggtgtttac--aaatggttcccaacacaagaaa-aaactctcatcaaagatgcccaaccctaaa 295  Q
    ||||||| ||||   ||||   ||||||| |||| | ||||| ||  ||||| ||||||||  |||||| ||||||||| ||||||  | ||||||||||    
T  29100360 tttttatccttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T
Q  296 -ttccctcctttg 307  Q
     ||||||||||||    
T  29100460 cttccctcctttg 29100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 47923824 - 47923728
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||||||||| | |||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47923824 aatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47923728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 21156542 - 21156685
Alignment:
Q  113 tcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcc 211  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    ||||||  ||||| ||| ||||||||||||||||| ||| ||||| ||  || |    
T  21156542 tcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactcataaatgattcctaagagaaaacactaaagcaagctttttgatcttttc 21156640  T
Q  212 tctaatgagatctcactacccaaggtgtttacaaatggttcccaa 256  Q
      |||||| |||||| || | ||||||||||| |||| |||||||    
T  21156641 aataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 21156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 24695101 - 24694990
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 250  Q
    ||||||| ||||| |||||||||| || ||||||||| |||||||| ||||| ||  ||||  |  ||| ||||||| ||||||||||||||| |||| |    
T  24695101 gtcacccacactctcaatgaatcctaaaagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcaccacccaaggtgtttac-aatgtt 24695003  T
Q  251 tcccaacacaaga 263  Q
    ||||||| |||||    
T  24695002 tcccaacccaaga 24694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 1736224 - 1736145
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  1736224 aatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 48438382 - 48438461
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| |||||||||||| |||||||| ||||| ||  ||||  |  ||| |||||||||||||||||||||||||    
T  48438382 aatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 48438461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 263
Target Start/End: Complemental strand, 1417460 - 1417315
Alignment:
Q  117 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 216  Q
    ||||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||| ||  ||||| || ||| |  |      
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactcccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatgg 1417361  T
Q  217 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    ||| ||||||||||| || |||||||| |||| |||||||| |||||    
T  1417360 tgaaatctcactacctaaagtgtttac-aatgtttcccaacccaaga 1417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 3715921 - 3715843
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3715921 atgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 4386963 - 4386851
Alignment:
Q  51 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 150  Q
    |||||||| || || || ||||| | ||||||||||  |||||||||||||| | ||   ||||||||||||||||  ||||||||||  |||| || ||    
T  4386963 agctctccaatccaataagataaaagtgatacaaatgggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaa 4386864  T
Q  151 gtcacccgcactc 163  Q
    ||||||| |||||    
T  4386863 gtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 40844801 - 40844861
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcc 211  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||    
T  40844801 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttcc 40844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 10274589 - 10274620
Alignment:
Q  207 cttcctctaatgagatctcactacccaaggtg 238  Q
    ||||||||||||||||||||||||||||||||    
T  10274589 cttcctctaatgagatctcactacccaaggtg 10274620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 30709709 - 30709630
Alignment:
Q  166 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||||| |||||||||||| |||||||| | ||| ||  ||||  | |||| |||||||| ||||||||||||||||    
T  30709709 aatgaatcctaagagaaaacacaaaaggaagctatttgatcattccaatgatgaaatctcactccccaaggtgtttacaa 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 47649737 - 47649815
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  47649737 atgaatcctaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctaactacccaaggtgtttacaa 47649815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 25929332 - 25929237
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacac--taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    ||||||| |||||||||||||||| ||||||||||||   ||| |||| ||||| || |||||  |  ||| |||||||||||||| ||||||||||    
T  25929332 gtcacccacactcacaatgaatcctaagagaaaacacaaaaaaagaagctttttgatccttccgatggtgaaatctcactacccaa-gtgtttacaa 25929237  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 26299138 - 26299250
Alignment:
Q  151 gtcacccgcactcacaatgaatccaaagagaaaacactaaa-ggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 249  Q
    ||||||| || || |||| ||||| |||||||||||| ||| ||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| ||||     
T  26299138 gtcacccacaatctcaattaatcctaagagaaaacacaaaaaggaagctttttgataattccaatggtgaaatctcactacccaaggtgtttac-aatgt 26299236  T
Q  250 ttcccaacacaaga 263  Q
    |||||||| |||||    
T  26299237 ttcccaacccaaga 26299250  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 8370407 - 8370313
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||| |||||||||||| ||||||| | |||| || |||||  |  ||| ||||||||||||||| ||||||| |||| |||||||| |||||    
T  8370407 atgaatcctaagagaaaacacaaaaggaa-acttttgatccttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaacccaaga 8370313  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 5852 - 5930
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  5852 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

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Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 2661 - 2756
Alignment:
Q  167 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 263  Q
    |||||||| |||| ||||||| |||||||| ||||| || |||||  |  ||| |||||||||| |||||||||||| |||| |||||||| |||||    
T  2661 atgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacgcaaggtgtttac-aatgtttcccaacccaaga 2756  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 23643 - 23777
Alignment:
Q  111 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaag-attttttattctt 209  Q
    ||||||||| |||||  ||||||||||| ||||| || | ||||  | |||||||||||||||| |||||||||||| ||| || |  |||||||| |||    
T  23643 gctcacaaaaaacaagatctaatttctacccatt-ttcatgtcagacacactcacaatgaatcctaagagaaaacacaaaatgatgccttttttatcctt 23741  T
Q  210 cctctaatgagatctcactacccaaggtgtttacaa 245  Q
    |   |  ||| |||||||||||||||||| ||||||    
T  23742 ctaatggtgacatctcactacccaaggtgattacaa 23777  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 16078 - 15983
Alignment:
Q  5 tttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 102  Q
    ||||||||||||| | |||||| | ||||| |||||  ||||||| | | |||  || ||||||||||||| | ||||||| ||||||||||||||||    
T  16078 tttacccagttcggtccaaaataatctactatggag--aagagaacaacactctaatccactatgataagagttatacaaagatgttacaagaaatta 15983  T

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