View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18142_low_10 (Length: 240)

Name: NF18142_low_10
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18142_low_10
NF18142_low_10
[»] chr2 (12 HSPs)
chr2 (20-233)||(30181551-30181762)
chr2 (91-217)||(30254522-30254647)
chr2 (20-217)||(30177395-30177588)
chr2 (33-212)||(30070629-30070806)
chr2 (20-70)||(30282240-30282290)
chr2 (146-217)||(30793142-30793213)
chr2 (88-208)||(30282105-30282225)
chr2 (135-199)||(30025519-30025583)
chr2 (135-199)||(30035114-30035178)
chr2 (135-199)||(30116539-30116603)
chr2 (135-199)||(30131296-30131360)
chr2 (135-199)||(30229252-30229316)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 30181551 - 30181762
Alignment:
Q  20 ttgaggacaaacacaatcatccttagagttctggatattcatgaacaagaagnnnnnnnnncagcaaagtgagaatgcaagccataacattttgaatcat 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  30181551 ttgaggacaaacacaatcatccttagagctctggatattcatgaacaaga--gaaaaaaaacagcaaagtgagaatgcaagccataacattttgaatcat 30181648  T
Q  120 gatcggagataattgattttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaatgccattcatcttcttccct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30181649 gatcggagataattgattttgtatatattaccgttttcgctactaattgttttatagtagtgttaacatcaccattccaatgccattcatcttcttccct 30181748  T
Q  220 cacaggttctgctc 233  Q
    |||| || ||||||    
T  30181749 cacatgtactgctc 30181762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 30254647 - 30254522
Alignment:
Q  91 agaatgcaagccataacattttgaatcatgatcggagataattgattttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtca 190  Q
    ||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||| |||| |||||  ||| | |||| | ||| |||| ||||    
T  30254647 agaatgcaagccataacattt-gaattatgatcggagataatcaattttgtatatattaccattttagctacatattttcttattgcagtattaaggtca 30254549  T
Q  191 ccattccaatgccattcatcttcttcc 217  Q
    || ||||||||||| ||||||| ||||    
T  30254548 ccgttccaatgccagtcatcttgttcc 30254522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 30177588 - 30177395
Alignment:
Q  20 ttgaggacaaacacaatcatccttagagttctggatattcatgaacaagaagnnnnnnnnncagcaaagtgagaatgcaagccataacattttgaatcat 119  Q
    |||||||||||| |||||| ||||||||||||||||| ||   ||||||||          || ||| |||||||||||||| ||||||||| |||||||    
T  30177588 ttgaggacaaactcaatcacccttagagttctggatactcgcaaacaagaa----aaggcacaacaatgtgagaatgcaagctataacattt-gaatcat 30177494  T
Q  120 gatcggagataattgattttgtatata--ttaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaatgccattcatcttcttcc 217  Q
    ||| ||||| | | ||||||||||| |  |||||| ||| ||||| |||| | |||||||||| |||| ||||||||||||||||||||||||| |||||    
T  30177493 gattggagaca-tagattttgtatagacattaccggtttagctacaaattttcttatagtagtattaaggtcaccattccaatgccattcatctccttcc 30177395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 30070806 - 30070629
Alignment:
Q  33 caatcatccttagagttctggatattcatgaacaagaagnnnnnnnnncagcaaagtgagaatgcaa-gccataacattttgaatcatgatcggagataa 131  Q
    ||||||||||||||||||||||||||||| ||||||||          || ||| |||||||||||| || |||||| || || |  |||| ||||||||    
T  30070806 caatcatccttagagttctggatattcataaacaagaa----aaagcacaacaatgtgagaatgcaaagcgataacaatt-gatttgtgattggagataa 30070712  T
Q  132 ttgattttgtatata--ttaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaatgccattcatctt 212  Q
    | ||||||||||| |  |||||||||| ||||| |||| | |||||||||| |||| ||||||||||||||||||||||||||    
T  30070711 tcgattttgtatagacattaccgtttttgctacaaattttcttatagtagtattaatgtcaccattccaatgccattcatctt 30070629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 30282290 - 30282240
Alignment:
Q  20 ttgaggacaaacacaatcatccttagagttctggatattcatgaacaagaa 70  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  30282290 ttgaggacaaactcattcatccttagagttctggatattcataaacaagaa 30282240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 30793213 - 30793142
Alignment:
Q  146 attaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaatgccattcatcttcttcc 217  Q
    ||||||||||| ||||| |||| | |||| ||| | || | |||||||||||||||||||||||||| ||||    
T  30793213 attaccgttttagctacgaattttcttattgtactatttaggtcaccattccaatgccattcatcttgttcc 30793142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 30282225 - 30282105
Alignment:
Q  88 gtgagaatgcaagccataacattttgaatcatgatcggagataattgattttgtatatattaccgtttt-cgctactaattgttttatagtagtgttaac 186  Q
    |||||||||||| | ||| ||||| |||||||||| |||||| ||  |||| ||| | |||||| |||| |||  | |||| | |||||||||| ||||     
T  30282225 gtgagaatgcaaacaatagcattt-gaatcatgattggagatgatcaatttggtaaacattaccttttttcgcagcaaattttcttatagtagtattaat 30282127  T
Q  187 gtcaccattccaatgccattca 208  Q
    ||||||||||||||| ||||||    
T  30282126 gtcaccattccaatgacattca 30282105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 30025583 - 30025519
Alignment:
Q  135 attttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaa 199  Q
    |||||||||  |||||| ||||| || | | || ||||||||||||||||| |||||||||||||    
T  30025583 attttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30025519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30035114 - 30035178
Alignment:
Q  135 attttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaa 199  Q
    |||||||||  |||||| ||||| || | | || ||||||||||||||||| |||||||||||||    
T  30035114 attttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30116539 - 30116603
Alignment:
Q  135 attttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaa 199  Q
    |||||||||  |||||| ||||| || | | || ||||||||||||||||| |||||||||||||    
T  30116539 attttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30116603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30131296 - 30131360
Alignment:
Q  135 attttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaa 199  Q
    |||||||||  |||||| ||||| || | | || ||||||||||||||||| |||||||||||||    
T  30131296 attttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30131360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30229252 - 30229316
Alignment:
Q  135 attttgtatatattaccgttttcgctactaattgttttatagtagtgttaacgtcaccattccaa 199  Q
    |||||||||  |||||| ||||| || | | || ||||||||||||||||| |||||||||||||    
T  30229252 attttgtatgcattacccttttcactgcaattttttttatagtagtgttaaggtcaccattccaa 30229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University