View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18142_low_13 (Length: 214)
Name: NF18142_low_13
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18142_low_13 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 51740487 - 51740700
Alignment:
| Q |
1 |
cacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagac |
100 |
Q |
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| T |
51740487 |
cacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagac |
51740586 |
T |
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| Q |
101 |
gagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaacca |
200 |
Q |
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| T |
51740587 |
gagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaacca |
51740686 |
T |
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| Q |
201 |
cttatttaatgcac |
214 |
Q |
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| T |
51740687 |
cttatttaatgcac |
51740700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10201282 - 10201495
Alignment:
| Q |
1 |
cacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagac |
100 |
Q |
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|||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||| |
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| T |
10201282 |
cacaataatatcaggaataattgtgtcgtttatagcaaagggggaagagaaaatgttttcaaacaaccatacaacaattgaaccacaagaaatggaagat |
10201381 |
T |
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| Q |
101 |
gagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaacca |
200 |
Q |
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| T |
10201382 |
gaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttccacca |
10201481 |
T |
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| Q |
201 |
cttatttaatgcac |
214 |
Q |
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| T |
10201482 |
cttatttaatgcac |
10201495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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