View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18142_low_2 (Length: 697)
Name: NF18142_low_2
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18142_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 180 - 675
Target Start/End: Original strand, 18691383 - 18691892
Alignment:
| Q |
180 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaagaagtctgcatgcaatgcattcacattttcttgat |
279 |
Q |
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| T |
18691383 |
tattcaaagtccaagcttgtgcataataggcatgttttcttattttcatgcatctgctttctaaggaagtctgcatgcaatgcattcacattttcttgat |
18691482 |
T |
|
| Q |
280 |
ctagtattctt--gtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
377 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691483 |
ctagtattcttttgtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctctaatcacaattt |
18691582 |
T |
|
| Q |
378 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
477 |
Q |
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| T |
18691583 |
ttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacacatcaattctaacc |
18691682 |
T |
|
| Q |
478 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
577 |
Q |
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| T |
18691683 |
cttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccggccaaaattcac |
18691782 |
T |
|
| Q |
578 |
aactttaacaccttacaaggaaaccaaata------------ttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
665 |
Q |
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| T |
18691783 |
aactttaacaccttacaaggaaaccaaatattgtagggctttttaaattgcacaaccaatatttaacattactaccctattgtttgtccattttctctta |
18691882 |
T |
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| Q |
666 |
tatctatcca |
675 |
Q |
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|||| ||||| |
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| T |
18691883 |
tatccatcca |
18691892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 18691130 - 18691309
Alignment:
| Q |
1 |
ggagtttgatttgtttcaagagccatatgtgggcatggaatttgattctgaagctgccagaaaattttatgttgaacatgctagatgggttggatttgtt |
100 |
Q |
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| T |
18691130 |
ggagtttgatttgtttcaagagccatatgtgggcatggaatttgattctgaagctgccagaaaattttatgttgaacatgctagatgggttggatttgtt |
18691229 |
T |
|
| Q |
101 |
ttacgccgttatgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
180 |
Q |
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| T |
18691230 |
ttacgccgttatgcaacgtcaacattctggaatcgatggcaggacttttgctcgttgaactggatgtaacaaacaaggat |
18691309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 17901842 - 17901675
Alignment:
| Q |
15 |
ttcaagagccatatgtgggcatggaatttgattctgaag---ctgccagaaaattttatgttgaacatgctagatgggttggatttgttttacgccgtta |
111 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||| |||| |||||||| | || ||||||||| | ||| |||| |
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| T |
17901842 |
ttcaagagccatatgtgggcatggagtttgattctgaagaagctgccaggaagttttatgctgaatatgctagacgcgtaggatttgttgtgcgc-gtta |
17901744 |
T |
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| Q |
112 |
tgcaacgtcaacgttctggaatcgatggcaggactcttgctcatcgaactggatgtaacaaacaaggat |
180 |
Q |
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| T |
17901743 |
tgcaacgtcgacgttctggaattgatggcaggactcttgctcgtcgacttggatgtaacaaacaaggat |
17901675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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