View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18142_low_6 (Length: 318)
Name: NF18142_low_6
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18142_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 34761163 - 34761474
Alignment:
| Q |
1 |
agttctgattcttcttaacttaagcaactctgaacctgctttataagtctggttagtcttcgaggggtggatagaatctgagacaatagagtgatgagac |
100 |
Q |
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| T |
34761163 |
agttctgattcttcttaacttaagcaactctgaacctgctttataagtctggttagtcttcgaggggtggatagaatctgagacaatagagtgatgagac |
34761262 |
T |
|
| Q |
101 |
aatgctggagtagttgaagtaagaagaagtaacaacaaagaaacaaaaacaggtagcatagatggagtgttttgagaagtggacaatatgagagaatggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34761263 |
aatgctggagtagttgaagtaagaagaagtaacaacaaagaaacaaaaacaggtagcataggtggagtgttttgagaagtggacaatatgagagaatggt |
34761362 |
T |
|
| Q |
201 |
tgtgtgtacatgcttgttttgaggcaatatggtgttgtctttttgtgtggtgtgctacaaaatatggttctttcctatgtcttttcaaggaaactgagta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34761363 |
tgtgtgtacatgcttgttttgaggcaatatggtgttgtctttttgtgtggtgtgctacaaaatatggttctttcctatgtcttttcaaggaaactgagta |
34761462 |
T |
|
| Q |
301 |
ttcctttgcttc |
312 |
Q |
| |
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|||||||||||| |
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| T |
34761463 |
ttcctttgcttc |
34761474 |
T |
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