View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18142_low_8 (Length: 272)
Name: NF18142_low_8
Description: NF18142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18142_low_8 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 12814 - 13062
Alignment:
| Q |
8 |
agagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagca |
107 |
Q |
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| T |
12814 |
agagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagca |
12913 |
T |
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| Q |
108 |
ttggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactc |
207 |
Q |
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| T |
12914 |
ttggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactc |
13013 |
T |
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| Q |
208 |
aatagttcgctatcacaattccacccgcatctgtggtggggttgttttt |
256 |
Q |
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| T |
13014 |
aatagttctctatcacaattccacccgcatctgtggtggggttgttttt |
13062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 2170447 - 2170199
Alignment:
| Q |
8 |
agagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagca |
107 |
Q |
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| T |
2170447 |
agagatgaaactcgaatctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagca |
2170348 |
T |
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| Q |
108 |
ttggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactc |
207 |
Q |
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| T |
2170347 |
ttggttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactc |
2170248 |
T |
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| Q |
208 |
aatagttcgctatcacaattccacccgcatctgtggtggggttgttttt |
256 |
Q |
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| T |
2170247 |
aatagttctctatcacaattccacccgcatctgtggtggggttgttttt |
2170199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 2188209 - 2188357
Alignment:
| Q |
44 |
tttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtggaattcacgtattcaagctg |
143 |
Q |
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| T |
2188209 |
tttaatagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtggagttcacgtattcaagctg |
2188308 |
T |
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| Q |
144 |
aaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaa |
192 |
Q |
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| T |
2188309 |
aaaactagtatggaggatattcgatttaccaatccgcataattgagaaa |
2188357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
| Q |
112 |
ttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatat |
163 |
Q |
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| T |
16694585 |
ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat |
16694636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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