View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18143_high_10 (Length: 252)

Name: NF18143_high_10
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18143_high_10
NF18143_high_10
[»] chr5 (1 HSPs)
chr5 (4-242)||(18964927-18965165)
[»] chr7 (6 HSPs)
chr7 (41-248)||(14076470-14076677)
chr7 (41-248)||(14386498-14386705)
chr7 (76-191)||(1986100-1986215)
chr7 (112-188)||(13417071-13417147)
chr7 (115-157)||(19351248-19351290)
chr7 (113-157)||(16839560-16839604)
[»] chr6 (6 HSPs)
chr6 (113-191)||(6921495-6921573)
chr6 (65-191)||(20770449-20770575)
chr6 (119-191)||(6954664-6954736)
chr6 (76-191)||(6943099-6943214)
chr6 (113-191)||(6948025-6948103)
chr6 (118-191)||(6935363-6935436)
[»] chr4 (1 HSPs)
chr4 (41-177)||(53774627-53774763)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 18965165 - 18964927
Alignment:
Q  4 gtgtttcatcctaaatctatgttgtttgattacaatagtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaaga 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18965165 gtgtttcatcctaaatctatgttggttgattacaatagtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcatcaaaaga 18965066  T
Q  104 ttctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18965065 ttctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgct 18964966  T
Q  204 tgatactccgaccctttgtgtattgatggattgcctttg 242  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  18964965 tgatactccgaccctttgtgtattgatgaattgcctttg 18964927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 14076470 - 14076677
Alignment:
Q  41 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 140  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||    || | |||  |||||||||||||||||||||||||||||||    
T  14076470 gtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttga 14076569  T
Q  141 tctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatggattgcctt 240  Q
    | ||||||  ||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||  |||||||||||||||||||    
T  14076570 tttggggactgagacatatacacaattgttactccctccatgttgtgataagttgccaccacttaatactccaacccttactgtattgatggattgcctt 14076669  T
Q  241 tgcttctc 248  Q
    || |||||    
T  14076670 tgtttctc 14076677  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 14386498 - 14386705
Alignment:
Q  41 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 140  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||    || | |||  |||||||||||||||||||||||||||||||    
T  14386498 gtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttga 14386597  T
Q  141 tctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatggattgcctt 240  Q
    | ||||||  ||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||  |||||||||||||||||||    
T  14386598 tttggggactgagacatatacacaattgttactccctccatgttgtgataagttgccaccacttaatactccaacccttactgtattgatggattgcctt 14386697  T
Q  241 tgcttctc 248  Q
    || |||||    
T  14386698 tgtttctc 14386705  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 1986215 - 1986100
Alignment:
Q  76 cgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactcc 175  Q
    |||||||| |||||||||||    |||| |||| |  |||| ||| |||| ||||||||||||||| ||||||  |||| || |||||||||||| ||||    
T  1986215 cgtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctcc 1986116  T
Q  176 ctccatgttgtgatga 191  Q
    ||| || |||||||||    
T  1986115 ctcgatattgtgatga 1986100  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 13417147 - 13417071
Alignment:
Q  112 attgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtga 188  Q
    ||||| |||||||||||||||||  ||||  ||||||  ||||||| |||||||||||| || |||| |||||||||    
T  13417147 attgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtga 13417071  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 19351290 - 19351248
Alignment:
Q  115 gagcaatttgtgattatctcacttgatctggggatggagacat 157  Q
    ||||||||||||||||| |||||||||||||| | ||||||||    
T  19351290 gagcaatttgtgattatttcacttgatctgggtacggagacat 19351248  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 16839604 - 16839560
Alignment:
Q  113 ttgagcaatttgtgattatctcacttgatctggggatggagacat 157  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||    
T  16839604 ttgagcaatttgtgattatttcacttgatttgggcacggagacat 16839560  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 6921573 - 6921495
Alignment:
Q  113 ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 191  Q
    |||| ||||||||||| |||||||||||| ||||||  ||||||| |||||| ||||| ||||||| ||||||||||||    
T  6921573 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatga 6921495  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 20770449 - 20770575
Alignment:
Q  65 gttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 164  Q
    ||||||||||| |||| |||||||||||||  || || | ||||   ||  ||||||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  20770449 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 20770548  T
Q  165 gttgttactccctccatgttgtgatga 191  Q
    |||||||||||||| ||||||||||||    
T  20770549 gttgttactccctcaatgttgtgatga 20770575  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 6954736 - 6954664
Alignment:
Q  119 aatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 191  Q
    |||||||||| |||||||||||| || |||  ||||||| |||||||||||| ||||| | ||||||||||||    
T  6954736 aatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatga 6954664  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 6943214 - 6943099
Alignment:
Q  76 cgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactcc 175  Q
    |||||||| |||||||||||    |||| |||| |  |||| ||||| ||||| |||||||||||| ||||||  ||||||| |||| | ||||| ||||    
T  6943214 cgtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctcc 6943115  T
Q  176 ctccatgttgtgatga 191  Q
    ||| ||||||||||||    
T  6943114 ctcaatgttgtgatga 6943099  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 6948103 - 6948025
Alignment:
Q  113 ttgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 191  Q
    |||| ||| ||||||| |||||||||||| ||||||  |||| || ||||| |||||| ||||||| ||||||||||||    
T  6948103 ttgaacaacttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatga 6948025  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 6935436 - 6935363
Alignment:
Q  118 caatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatga 191  Q
    ||||| ||||| |||||||||||| ||||||  ||||||| |||| | ||||| ||||||| ||||||||||||    
T  6935436 caattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatga 6935363  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 53774627 - 53774763
Alignment:
Q  41 gtgtgtatttgagtaacagtttaagttggttggtccgtcaccgttataattgtcagcaaaagattctttcgattgagcaatttgtgattatctcacttga 140  Q
    |||||||| ||||||||||| | || ||||||||  | ||||||||||| ||||| || |||| |||| | |  || |||||||||||||| || |||||    
T  53774627 gtgtgtatctgagtaacagtattagctggttggtttgccaccgttataaatgtcaacagaagaatcttacaaccgaacaatttgtgattatttcgcttga 53774726  T
Q  141 tctggggatggagacatttacacagttgttactccct 177  Q
    | ||| ||  ||||||| ||||||||||  |||||||    
T  53774727 tttggagacagagacatatacacagttgcaactccct 53774763  T

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