View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18143_high_5 (Length: 374)
Name: NF18143_high_5
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18143_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 34429145 - 34429417
Alignment:
| Q |
87 |
tcttcccgaacaagaatctttccccttcccttccatcccctcacttcctttcaacatccgacaacgaacgtctgacgctccttcaacttcatcttctcac |
186 |
Q |
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| T |
34429145 |
tcttcccgaacaagaatctttccccttcccttccatcccctcacttcctttcaacatccgacaacgaacgtctgacgctccttcaacttcatcttctcac |
34429244 |
T |
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| Q |
187 |
tctatcgaaaccctccctgccggattcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaaacatccgaagccgaaccgg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429245 |
tctatcgaaaccctccctgccggattcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaaacatccgaagccgaaccgg |
34429344 |
T |
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| Q |
287 |
ttgttgattctgcaaaaactgtagcgaaatctgtgaagaaacatccgaatttgataggtgctagtgtggtaac |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34429345 |
ttgttgattctgcaaaaactgtagcgaaatctgtgaagaaacatccgaatttgataggtgctagtgtggtaac |
34429417 |
T |
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Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 88 - 267
Target Start/End: Complemental strand, 33738529 - 33738350
Alignment:
| Q |
88 |
cttcccgaacaagaatctttccccttcccttccatcccctcacttcctttcaacatccgacaacgaacgtctgacgctccttcaacttcatcttctcact |
187 |
Q |
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|||||| ||||| |||||||||| |||| |||||||| || | |||||||| |||||||||||||| |||| | ||||||||||||| |||||||||| |
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| T |
33738529 |
cttcccaaacaacaatctttccctctcccatccatcccatccttccctttcaaaatccgacaacgaacctctggcactccttcaacttcgtcttctcact |
33738430 |
T |
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| Q |
188 |
ctatcgaaaccctccctgccggattcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaa |
267 |
Q |
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| ||| ||||||||||| |||| ||||||||||||||||||| ||| ||||||||| |||| |||||||||| |||||| |
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| T |
33738429 |
caatcaaaaccctcccttccggcttcttctccaaatcaattttcttcaccaaaattcttaaatccttactcaatctagaa |
33738350 |
T |
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