View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18143_high_7 (Length: 321)
Name: NF18143_high_7
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18143_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 13308737 - 13308442
Alignment:
| Q |
1 |
attgccagttctaccttcgtgacaggtggtggtggtgccagttggaatcggacttcgctctgagttggagtagtcatgatttgattctgactttgaattt |
100 |
Q |
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||||||| |||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
13308737 |
attgccatttcttccttcttgacaagtggtggtggtgccatttggaattggacttcgctctgagttggagtagtcatgatttgatt------------tt |
13308650 |
T |
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| Q |
101 |
gaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13308649 |
gaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgtt |
13308550 |
T |
|
| Q |
201 |
gtccacaattttccctgcattcaaacattgaaacattagaagggccatctctttctgcttgttgtctttttgttgctttttcacctgctctttagccttc |
300 |
Q |
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| T |
13308549 |
gtccacaattttccctgcattcaggcattgaaacattagaagggctatctctttctgcttgttgtctttttgttgctttttcacctgctctttagccttc |
13308450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 15076146 - 15076010
Alignment:
| Q |
100 |
tgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgt |
199 |
Q |
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| T |
15076146 |
tgaccattattatccactttttccaatcttctatcagtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcat |
15076047 |
T |
|
| Q |
200 |
tgtccacaattttccctgcattcaaacattgaaacat |
236 |
Q |
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| T |
15076046 |
tgtgcacaatttcttcagcattaatacattgaaacat |
15076010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 15073353 - 15073261
Alignment:
| Q |
100 |
tgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgac |
192 |
Q |
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| T |
15073353 |
tgaccattattatccacttcttccaatcttctatgaatatccttcaaattttgatcaatcaaccaagcaagaacattcaaatcaatcattgac |
15073261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 11096236 - 11096184
Alignment:
| Q |
120 |
ttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagat |
172 |
Q |
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|||||| | ||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
11096236 |
ttccaaacgtctaccaatgtccttcaaattatggtcaatcaaccaagaaagat |
11096184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 11247929 - 11247995
Alignment:
| Q |
99 |
ttgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaa |
165 |
Q |
| |
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|||||||||||| ||| || || |||||||||| |||| |||||||| || ||||||||||||||| |
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| T |
11247929 |
ttgaccattattatcctcttctcccaaccttctaccaacctccttcaatttctggtcaatcaaccaa |
11247995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 11106912 - 11106879
Alignment:
| Q |
139 |
tccttcaaattttggtcaatcaaccaagcaagat |
172 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
11106912 |
tccttcaaattgtggtcaatcaaccaagcaagat |
11106879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 10987249 - 10987169
Alignment:
| Q |
92 |
tttgaatttgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagat |
172 |
Q |
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||||| ||||| |||| || ||| ||||||||| | ||| ||| ||||||||| || |||||||||||||||||||||| |
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| T |
10987249 |
tttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaatttatggtcaatcaaccaagcaagat |
10987169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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