View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18143_high_8 (Length: 281)
Name: NF18143_high_8
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18143_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3563941 - 3563676
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3563941 |
cacggtttttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggatggggcttcacc |
3563842 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttccc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563841 |
ggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccc |
3563742 |
T |
|
| Q |
201 |
accccaatgtctccggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga |
266 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563741 |
accccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga |
3563676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3569589 - 3569313
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
3569589 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtaggatggggcttcacc |
3569490 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttccc |
200 |
Q |
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|||||||||||||||||| || |||||||||||||||||||| || |||||||| | ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
3569489 |
ggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccc |
3569390 |
T |
|
| Q |
201 |
accccaatgtctccggtggatggggaaagcttgattgccttccctacaaatgatgaagaagaga--gacattgttga |
275 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
3569389 |
accccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttga |
3569313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3575920 - 3575642
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| || || || |||||||| |
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|
| T |
3575920 |
cacggttcttggcaaatgtctctgggtcagcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataagatggagcttcacc |
3575821 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttccc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| || |||||||||| || ||||||| |||||| ||||||||| |||| ||||||| |
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| T |
3575820 |
agagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttccc |
3575721 |
T |
|
| Q |
201 |
accccaatgtctccggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga--cattgttgatg |
277 |
Q |
| |
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| | ||| |||| ||||| ||||||||||||||||||||||| || | || ||||||||||||| ||||||||||| |
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| T |
3575720 |
atcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatg |
3575642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3585298 - 3585563
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| || |||||||| || || |||||||| |
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| T |
3585298 |
cacggtttttggcaaatgtctctgggtcggcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgaggtaagatggagcttcacc |
3585397 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttccc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| | |||||||||| | ||| |||||||||||||| ||||||||| |||| ||||||| |
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| T |
3585398 |
agagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttccc |
3585497 |
T |
|
| Q |
201 |
accccaatgtctccggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga |
266 |
Q |
| |
|
| | ||| |||| || || |||||||||||||||||||| || || | ||||||||| |||||| |
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| T |
3585498 |
atcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagaga |
3585563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 3572619 - 3572371
Alignment:
| Q |
18 |
gtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcaccggagaatgggcccaagt |
117 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||||||| |
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| T |
3572619 |
gtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagt |
3572520 |
T |
|
| Q |
118 |
atttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttcccaccccaatgtctccggt |
217 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||||||| |||| |||||||||||||| ||||||||| || | |||||||| ||| |||| || |
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| T |
3572519 |
acttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagt |
3572420 |
T |
|
| Q |
218 |
ggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga |
266 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
3572419 |
agagggggaaagcttgattgccttcccaaccaatgatgaagaagagaga |
3572371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 13275869 - 13275608
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||| | |||||| || |||||||| |||||||| || | ||| || ||||| ||||| |
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|
| T |
13275869 |
cacggttttttgcaaatgtctctggatcagcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatggggcctcacc |
13275770 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttccagaagaaacagacttcttggtggttgctttcctcattgtgactcttccc |
200 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||||| ||| |||| ||||| ||||| |
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|
| T |
13275769 |
aaagaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaaac---tttctttgtggttg-ttttttcatggtgacccttcca |
13275674 |
T |
|
| Q |
201 |
accccaatgtctccggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagaga |
266 |
Q |
| |
|
| |||| |||| ||| || ||| ||| ||||||||||| || || |||||||||||||||||| |
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|
| T |
13275673 |
ataccaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagaga |
13275608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 38356956 - 38356806
Alignment:
| Q |
1 |
cacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggacggggcttcacc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || || || || || | ||| ||||||| ||||| |
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|
| T |
38356956 |
cacggttcttggcgaatgtctctgggtcagcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaagacgggggctcacc |
38356857 |
T |
|
| Q |
101 |
ggagaatgggcccaagtatttgacacggtctggaccgtaccaaggacttcc |
151 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| |||||||| || ||||| |
|
|
| T |
38356856 |
agagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttcc |
38356806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33993245 - 33993313
Alignment:
| Q |
5 |
gttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattc |
73 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||||||||||| || || |||||||| ||||| |
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| T |
33993245 |
gttcttggcaaatgcttctggatcagcagataaaccagcagtgtcccatccataatcaccagggaattc |
33993313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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