View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18143_low_1 (Length: 745)

Name: NF18143_low_1
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18143_low_1
NF18143_low_1
[»] chr5 (19 HSPs)
chr5 (476-733)||(10210455-10210712)
chr5 (38-479)||(10212821-10213279)
chr5 (476-691)||(10108453-10108665)
chr5 (495-733)||(10216249-10216476)
chr5 (192-476)||(10105150-10105454)
chr5 (19-199)||(9677191-9677371)
chr5 (19-190)||(12105294-12105465)
chr5 (39-147)||(9683918-9684025)
chr5 (146-292)||(9675522-9675660)
chr5 (46-148)||(10211009-10211111)
chr5 (373-476)||(9675292-9675395)
chr5 (27-115)||(9675660-9675756)
chr5 (631-733)||(9683075-9683170)
chr5 (316-373)||(9683324-9683380)
chr5 (313-369)||(9675430-9675486)
chr5 (478-550)||(9683423-9683495)
chr5 (374-410)||(10102593-10102629)
chr5 (204-290)||(9683423-9683509)
chr5 (208-290)||(10210638-10210720)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 476 - 733
Target Start/End: Complemental strand, 10210712 - 10210455
Alignment:
Q  476 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10210712 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 10210613  T
Q  576 ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga 675  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10210612 ccatcgccgaccgatgccgtctttgtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga 10210513  T
Q  676 atatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtg 733  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10210512 atatgcatcaccaggtccaggagtttcatacaactagatgtatcaaaattgctctgtg 10210455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 479
Target Start/End: Complemental strand, 10213279 - 10212821
Alignment:
Q  38 accgggggctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaa 137  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  10213279 accgggggctttgctttatcctatctatggtgaaggagaactaacacaagccttttgtcgccgtgcttctgtcaaaggttgcatttatttaagttttaaa 10213180  T
Q  138 gg-atttatgaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttac 236  Q
    || ||||| | ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||    
T  10213179 gggatttaggcggccgtttcttaaaatttctaaatatctaaatttcattctctttaaatattgcaaattgttgttttgttaaacttatatgtttatttac 10213080  T
Q  237 gtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttatgg------------------tctttgatatgtttatactaatataa 318  Q
     ||||||| ||||  ||||| ||||||  ||||||  |||||||||||||||||||                  |||| |||||||||||||||||||||    
T  10213079 atcttaaaattttctgaatcaggttcgtcgaatgcctgttatttctctgcttatggataaggtacataaatcattcttagatatgtttatactaatataa 10212980  T
Q  319 tatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatc--tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaag 416  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||  |||||    
T  10212979 tatttttgagaagagatgaggttgaatatcccccaagtgcaaagcaatttcatctttgtcatttttaaacgaatgttgcaggtgactgagttgcgtaaag 10212880  T
Q  417 gtgtcagatcagcttatactagatcaatcatttgtaataccatcaacacaatctttgtctaaa 479  Q
    |||| ||||||||||||    |||| ||| |||||||| ||||||||||||||||||| ||||    
T  10212879 gtgttagatcagcttat----gatccatcctttgtaattccatcaacacaatctttgtttaaa 10212821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 476 - 691
Target Start/End: Original strand, 10108453 - 10108665
Alignment:
Q  476 taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca 575  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10108453 taaacataagtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttttcctgaacccattcttcacgattcca 10108552  T
Q  576 ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatatt-aaaggaatggtggctaaggg 674  Q
    |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10108553 ccatcgccgaca----ccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaaggaatggtggctaaggg 10108648  T
Q  675 aatatgcatcaccaggt 691  Q
    |||||||||||| ||||    
T  10108649 aatatgcatcacaaggt 10108665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 495 - 733
Target Start/End: Complemental strand, 10216476 - 10216249
Alignment:
Q  495 acatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccg 594  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||| | |||| ||               
T  10216476 acatcttaaacttttgtgaattaggttctcagaatgcctgttatttatctgcttatcctgaacccatccttcaccattctatcatcacca---------- 10216387  T
Q  595 tctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtcca 694  Q
    |||||||||||||| ||| |||||||||||| | || |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  10216386 tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca 10216287  T
Q  695 ggagtttcatacagccagatgtatcaaaattgctctgtg 733  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10216286 ggagtttcatacagccagatgtatc-aaattgctctgtg 10216249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 192 - 476
Target Start/End: Original strand, 10105150 - 10105454
Alignment:
Q  192 aaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttatg 291  Q
    |||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||| ||||| |||||||  |||||  ||||||||||||||||||    
T  10105150 aaatattgcaaattgttgttttgttgaacatgtatgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttatg 10105249  T
Q  292 g-------------------tctttgatatgtttatactaatataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatc 372  Q
    |                   ||||  ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  10105250 gatgagtgtacagaaataattcttacatatgtttagactaatataatatttttgagaagagatgaggttgaatatcccgcaagtgcaaagcaatttcatc 10105349  T
Q  373 --tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatactagatcaatcatttgtaataccatcaacacaatct 470  Q
      |||||| | |||| |||||||||||||||||||||||| || ||||||||||||||||||| || ||||  || || |||||||||||||||||||||    
T  10105350 tttgtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttat-ctggatccttccttcgtaataccatcaacacaatct 10105448  T
Q  471 ttgtct 476  Q
    ||||||    
T  10105449 ttgtct 10105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 9677371 - 9677191
Alignment:
Q  19 ctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttg 118  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||| || ||  ||| | || |||||||||||      
T  9677371 ctttccggtttccgaatgcaccaggggctttgctttatcctatttatggtgaaggagaaccaacacaagctttctgccgtcatactgctgtcaaaggtca 9677272  T
Q  119 catttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattg 199  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  9677271 catttatgtaagttttaaaggatttatgaggctgtttcttaaaatttataaataccttaatttcactctctttaaatattg 9677191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 12105465 - 12105294
Alignment:
Q  19 ctttccggtttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttg 118  Q
    ||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||| | ||||||||||| || || || |||||| |||| |    
T  12105465 ctttccggtttccgaatgcaccaggggctttgctttatcctacttatggtgaaggagaactaaaagaagccttttgtcgttgtactgctgtcataggtcg 12105366  T
Q  119 catttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaaataccttaatttcattctctt 190  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12105365 catttatgtatgttttaaaggatttatgaggctgtttcttaaaatttctaaatatcttaatttcattctctt 12105294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 9684025 - 9683918
Alignment:
Q  39 ccgggggctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaag 138  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||| |||||||| |||||||||||||||||||| |||| |||||||    
T  9684025 ccgggggctttgctttatcctatttatggtgaaggggaactaccacaagctttttgtcgtcgtgctgctgtcaaaggttgcatttatgtaag-tttaaag 9683927  T
Q  139 gatttatga 147  Q
    |||||||||    
T  9683926 gatttatga 9683918  T

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Target: chr5; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 146 - 292
Target Start/End: Complemental strand, 9675660 - 9675522
Alignment:
Q  146 gaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaac 245  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||  ||||||||| |||||||        ||||||||||||||||||| ||||||||    
T  9675660 gaggccttttctttaaatttccaaataccttaatttcattctcttttaatattgcatattgttg--------aacttatatgcttatttacatcttaaac 9675569  T
Q  246 ttttgcgaatccggttcgctgaatgctggttatttctctgcttatgg 292  Q
    ||||| ||||| ||||||  |||||| |||||| |||||||||||||    
T  9675568 ttttgtgaatcaggttcgacgaatgccggttatatctctgcttatgg 9675522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 10211111 - 10211009
Alignment:
Q  46 ctttactttatcctatttatggtgaaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttat 145  Q
    ||||||||| ||||||||||||||||||| |||||  |||||| |||||| |||||||| || ||||||||||||||||| ||||||||| |||||||||    
T  10211111 ctttactttgtcctatttatggtgaaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttat 10211012  T
Q  146 gag 148  Q
    |||    
T  10211011 gag 10211009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 373 - 476
Target Start/End: Complemental strand, 9675395 - 9675292
Alignment:
Q  373 tgtcatatgtaaacgaatgttgcaggtgactgagttgtataaaggtgtcagatcagcttatactagatcaatcatttgtaataccatcaacacaatcttt 472  Q
    |||||| | ||||| ||||| |||| | ||||||| |||| ||||||| ||||||| |||| || |||| ||| |||||||| ||||||||||| | |||    
T  9675395 tgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgttt 9675296  T
Q  473 gtct 476  Q
    ||||    
T  9675295 gtct 9675292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 9675756 - 9675660
Alignment:
Q  27 tttccgagtgcaccgggggctttactttatcctatttatggtgaaggagaa--------ctaacacaagccttttgttgtcgtgcttctgtcaaagg 115  Q
    ||||||| |||||||||| ||||  ||||||||| ||||||||||||||||        |||||||||||||||||| |||||||| ||||| ||||    
T  9675756 tttccgaatgcaccggggactttgatttatcctacttatggtgaaggagaactaatagtctaacacaagccttttgtcgtcgtgctgctgtctaagg 9675660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 733
Target Start/End: Complemental strand, 9683170 - 9683075
Alignment:
Q  631 cagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctct 730  Q
    ||||||||||||||   ||| |||||||||||||| |||| ||||||||||||||      | ||||||| |||| ||||||||||||| ||||||||||    
T  9683170 cagatgttgagtcatgtagacattaaaggaatggttgctaggggaatatgcatca------caaggagttccataaagccagatgtatc-aaattgctct 9683078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 9683380 - 9683324
Alignment:
Q  316 taatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttcatct 373  Q
    |||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||||    
T  9683380 taatatttttgataagagacgaggttgaatatcccc-aagtgcaaagcaatttcatct 9683324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 9675486 - 9675430
Alignment:
Q  313 atataatatttttgagaagaaatgaggttgaaaatcccccaagtgcaaagcaatttc 369  Q
    ||||| || ||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  9675486 atatattaattttgagaagagacgaggttgaatatccccgaagtgcaaagcaatttc 9675430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 9683495 - 9683423
Alignment:
Q  478 aacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat 550  Q
    ||||||| ||||||||  ||||||||||||| ||| ||||||| ||||||||||  |||||||  ||||||||    
T  9683495 aacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat 9683423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 10102593 - 10102629
Alignment:
Q  374 gtcatatgtaaacgaatgttgcaggtgactgagttgt 410  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10102593 gtcatttgtaaacgaatgttgcaggtgactgagttgt 10102629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 9683509 - 9683423
Alignment:
Q  204 ttgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 290  Q
    |||||||||||  |||| ||||||||||| | | ||||||||||| | | ||| ||||| | |||||| ||||||||| ||||||||    
T  9683509 ttgttgttttgctgaacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat 9683423  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 10210720 - 10210638
Alignment:
Q  208 tgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgcttat 290  Q
    ||||||||  ||| ||| |||||||  || ||||||||||||| ||||| ||||| | ||||||| ||||||| |||||||||    
T  10210720 tgttttgttaaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttat 10210638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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