View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18143_low_3 (Length: 696)

Name: NF18143_low_3
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18143_low_3
NF18143_low_3
[»] chr6 (9 HSPs)
chr6 (56-650)||(28956076-28956672)
chr6 (34-104)||(26680659-26680729)
chr6 (34-102)||(14856028-14856096)
chr6 (637-680)||(28956010-28956053)
chr6 (34-102)||(14847170-14847238)
chr6 (315-431)||(28994241-28994362)
chr6 (22-119)||(13466746-13466845)
chr6 (34-101)||(31023400-31023467)
chr6 (34-104)||(10345723-10345792)
[»] chr4 (7 HSPs)
chr4 (34-104)||(53982183-53982253)
chr4 (34-104)||(6156640-6156710)
chr4 (34-104)||(6162337-6162407)
chr4 (34-106)||(20192592-20192664)
chr4 (34-106)||(20197956-20198028)
chr4 (23-98)||(12733907-12733982)
chr4 (32-104)||(16433647-16433718)
[»] chr2 (15 HSPs)
chr2 (34-104)||(26694242-26694312)
chr2 (34-104)||(26702338-26702408)
chr2 (34-104)||(630820-630890)
chr2 (34-104)||(636371-636441)
chr2 (34-104)||(7909963-7910033)
chr2 (34-104)||(7917418-7917488)
chr2 (34-104)||(14893319-14893389)
chr2 (34-104)||(22430437-22430507)
chr2 (34-104)||(22436031-22436101)
chr2 (34-104)||(43777080-43777150)
chr2 (34-101)||(14898875-14898942)
chr2 (34-104)||(22425067-22425137)
chr2 (34-104)||(43771554-43771622)
chr2 (34-101)||(1519238-1519305)
chr2 (41-101)||(14188410-14188470)
[»] chr7 (12 HSPs)
chr7 (34-121)||(557872-557959)
chr7 (34-121)||(576055-576142)
chr7 (34-104)||(42167621-42167691)
chr7 (34-104)||(16648512-16648582)
chr7 (34-104)||(17622873-17622943)
chr7 (40-104)||(25499165-25499229)
chr7 (34-106)||(32148564-32148636)
chr7 (22-104)||(11726471-11726552)
chr7 (60-113)||(11726398-11726451)
chr7 (40-104)||(25493928-25493992)
chr7 (34-104)||(44655688-44655758)
chr7 (59-104)||(42208982-42209027)
[»] chr3 (16 HSPs)
chr3 (22-121)||(2168639-2168738)
chr3 (34-121)||(2174218-2174305)
chr3 (34-121)||(13990904-13990991)
chr3 (34-104)||(23338918-23338988)
chr3 (34-104)||(23344465-23344535)
chr3 (34-104)||(48216336-48216406)
chr3 (34-121)||(13985332-13985419)
chr3 (34-121)||(40802562-40802649)
chr3 (34-104)||(3110509-3110579)
chr3 (34-104)||(3112126-3112196)
chr3 (34-104)||(40800638-40800708)
chr3 (34-104)||(13980656-13980726)
chr3 (34-101)||(9730313-9730380)
chr3 (160-216)||(13992089-13992145)
chr3 (59-104)||(34578842-34578887)
chr3 (160-216)||(13980757-13980813)
[»] chr8 (4 HSPs)
chr8 (34-104)||(12756162-12756232)
chr8 (34-104)||(24052034-24052104)
chr8 (34-104)||(41043568-41043638)
chr8 (34-104)||(41048941-41049011)
[»] chr5 (6 HSPs)
chr5 (34-104)||(28366981-28367051)
chr5 (34-104)||(28375721-28375791)
chr5 (40-101)||(34647940-34648001)
chr5 (34-104)||(1536555-1536625)
chr5 (24-99)||(54428-54502)
chr5 (34-104)||(30963174-30963242)
[»] chr1 (9 HSPs)
chr1 (34-104)||(15711132-15711202)
chr1 (34-104)||(27178970-27179040)
chr1 (34-104)||(27194971-27195041)
chr1 (22-113)||(16498712-16498803)
chr1 (34-117)||(17721815-17721898)
chr1 (34-104)||(15716713-15716783)
chr1 (34-104)||(26711477-26711547)
chr1 (34-104)||(33498419-33498489)
chr1 (40-104)||(3343879-3343943)
[»] scaffold0004 (2 HSPs)
scaffold0004 (34-104)||(345671-345741)
scaffold0004 (34-104)||(350992-351062)
[»] scaffold0169 (2 HSPs)
scaffold0169 (34-104)||(11047-11117)
scaffold0169 (160-216)||(8698-8754)
[»] scaffold0124 (1 HSPs)
scaffold0124 (34-104)||(39553-39623)
[»] scaffold0121 (1 HSPs)
scaffold0121 (34-104)||(11426-11496)
[»] scaffold0211 (1 HSPs)
scaffold0211 (60-104)||(26993-27037)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 56 - 650
Target Start/End: Complemental strand, 28956672 - 28956076
Alignment:
Q  56 tacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaatagtatgcatgagttatgagttgggaaacaaattat 155  Q
    ||||||||| ||||||||||||||||||| ||  |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  28956672 tacaattagattacatgtgagctctatttctagtgaaatacaataactttggaaacaaacacaatagtatgcatgagttatgaggtgggaaacaaattat 28956573  T
Q  156 gagttaataatatgacacaataactcaattgctaaatagccatctacttataatattcatatcgcaagaatcattttattgaatcatttttatttgtttt 255  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  28956572 gagttaataatatgacacaataactcaattgtgaaatagccgtcttcttataatattcatatagcaagaatcattttatagaatcatttttatttgtttt 28956473  T
Q  256 gcatgtaccaaagcttttgcaactaaatgaaaagnnnnnnnnntagtcactccact-aagaaattatgtatgcaggaaaactatttaaattatgttgggt 354  Q
    |||||||||||||||||||||||||||| ||||          |  |||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  28956472 gcatgtaccaaagcttttgcaactaaataaaaa-----aaaaatgttcactccactaaataaattatgtatgcaggaaaactatttaaattatgttgggt 28956378  T
Q  355 gatcgattctagataatattgagaaattaaattctcttacttgtcttaatctagaaaaac-aagaaaaatgtacacaagtttagtaaggagaaggaattt 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||| ||    
T  28956377 gatcgattctagataatattgagaaattaaattctcttacttgtcttaatctcgaaaaacaaagaaaaatgtacacaagtttagtaacgaaaaggaa-tt 28956279  T
Q  454 ttttatagtcgtaaccataaattaataggttttagacacacataca--nnnnnnnnnnnaaataatgaaataatttagtatttt----tnnnnnnnnntt 547  Q
    |||||||  |||||  |||||| ||||||||||  ||||||||| |             ||||||| |||| ||||||||||||              ||    
T  28956278 ttttataaccgtaaatataaatgaataggttttgaacacacatatattattatttttttaaataataaaatgatttagtattttaagaataaaaaaattt 28956179  T
Q  548 atatatgtgtgactaaatactattcatttgtataaacaactataaaagaatgccgcagtaacgagatatgtcgatgggacgaagaaaaaagttgaataga 647  Q
    |||||||| |||  ||| ||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28956178 atatatgtatgatcaaacactattcatttgtgtttgcaactataaaagaatgccgcagtaacgagatatgtcgatgggacgaagaaaaaagttgaataga 28956079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 26680729 - 26680659
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  26680729 attatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 26680659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 14856096 - 14856028
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgac 102  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||    
T  14856096 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgac 14856028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 637 - 680
Target Start/End: Complemental strand, 28956053 - 28956010
Alignment:
Q  637 agttgaatagatgtctattattgctcattaatgtatggtatact 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28956053 agttgaatagatgtctattattgctcattaatgtatggtatact 28956010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 14847238 - 14847170
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgac 102  Q
    ||||| ||||||||||||||| || ||||||||||||| |||| ||||||| || ||||||||||||||    
T  14847238 attatattattctcttgtgatgtataattaggttacatatgagttctatttatagagaaatacaatgac 14847170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 28994362 - 28994241
Alignment:
Q  315 aaattatgtatgcaggaaaactatttaaattatgttgggtgatcgattctagata------atattgagaaattaaattctcttacttgtcttaatctag 408  Q
    ||||||||||||  |||||| |||||| ||| | |||||||||| |||||| |||      ||| ||||||||||||||||||||||||||| || |||     
T  28994362 aaattatgtatgttggaaaattatttatatttttttgggtgatccattctacatatagttaatagtgagaaattaaattctcttacttgtctgaaacta- 28994264  T
Q  409 aaaaacaagaaaaatgtacacaa 431  Q
    ||||||||  |||||||| ||||    
T  28994263 aaaaacaaagaaaatgtatacaa 28994241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 13466746 - 13466845
Alignment:
Q  22 agagagaaaagtattatgttattctcttgtgat-ttacaattaggttacatgtgagctct-atttttaaagaaatacaatgactttgaaaacaaacacaa 119  Q
    ||||||||||||||| | |||||||||||||||  |||||||| |||| || |||| ||| |||| || | ||||| |||||||| |||||||| |||||    
T  13466746 agagagaaaagtattttattattctcttgtgatcatacaattaagttatatatgagatctcatttatagaaaaatataatgacttggaaaacaagcacaa 13466845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 31023467 - 31023400
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    ||||| ||||| || |||||| |||||||| ||||||||||| |||||||| || |||| ||||||||    
T  31023467 attatattattttcatgtgatatacaattatgttacatgtgatctctatttatatagaactacaatga 31023400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 10345723 - 10345792
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||| | | |||||| ||||||||||| |||||||| || ||||||| ||||||||    
T  10345723 attatattattctcttgtgttgt-caattaagttacatgtgaactctatttatatagaaatagaatgactt 10345792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 53982253 - 53982183
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  53982253 attatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 53982183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 6156710 - 6156640
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  6156710 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 6156640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 6162407 - 6162337
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  6162407 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 6162337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 20192592 - 20192664
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttg 106  Q
    ||||| ||||||||||||||| || ||||||||||||| | |||||||||| || ||||||||||||||||||    
T  20192592 attatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 20197956 - 20198028
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttg 106  Q
    ||||| ||||||||||||||| || ||||||||||||| | |||||||||| || ||||||||||||||||||    
T  20197956 attatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 20198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 12733907 - 12733982
Alignment:
Q  23 gagagaaaagtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaa 98  Q
    |||||| || |||| | |||||||||||||||   ||||||||||||||||||||||||||| || ||||||||||    
T  12733907 gagagataaatattctattattctcttgtgataaccaattaggttacatgtgagctctatttatagagaaatacaa 12733982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 16433718 - 16433647
Alignment:
Q  32 gtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    |||||||||||||||| || ||  ||| ||||||||||||||||| | ||||| ||  |||||||||||||||    
T  16433718 gtattatgttattctcatgcgacatacgattaggttacatgtgag-tttatttatagtgaaatacaatgactt 16433647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 26694312 - 26694242
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  26694312 attatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 26694242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 26702408 - 26702338
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  26702408 attatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 26702338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 630890 - 630820
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  630890 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 630820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 636441 - 636371
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  636441 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 636371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 7909963 - 7910033
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  7909963 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 7910033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 7917418 - 7917488
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  7917418 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 7917488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 14893389 - 14893319
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  14893389 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 14893319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 22430507 - 22430437
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  22430507 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 22430437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 22436101 - 22436031
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  22436101 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 22436031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 43777150 - 43777080
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  43777150 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 43777080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 14898942 - 14898875
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || |||||||||||||    
T  14898942 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 14898875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 22425137 - 22425067
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || |||| |||||||| |||||||||||| || ||||||||||||||||    
T  22425137 attatattattctcttgtgatgtataattgggttacatatgagctctatttatagagaaatacaatgactt 22425067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 43771622 - 43771554
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || |||||||||| |||  |||||||||| || ||||||||||||||||    
T  43771622 attatattattctcttgtgatgtataattaggttatatg--agctctatttatagagaaatacaatgactt 43771554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 1519305 - 1519238
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    ||||| |||||||||||  || |  ||||||||||||| |||||||||||| || |||||||||||||    
T  1519305 attatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatga 1519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 14188470 - 14188410
Alignment:
Q  41 tattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    |||||||||||| | |||||||| ||||||||||  |||||||| || |||| ||||||||    
T  14188470 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 14188410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 557872 - 557959
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| |||||||||||||||| ||| |||||||| || |||||||||||||||| | || ||| |||||||    
T  557872 attatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgggaagcaagcacaata 557959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 576055 - 576142
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| |||||||||||||||| ||| |||||||| || |||||||||||||||| | || ||| |||||||    
T  576055 attatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgggaagcaatcacaata 576142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 42167621 - 42167691
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  42167621 attatgttattttcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 42167691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 16648582 - 16648512
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| || |||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  16648582 attatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 16648512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 17622943 - 17622873
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| || |||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  17622943 attatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 17622873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25499229 - 25499165
Alignment:
Q  40 ttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||| ||  |||||||||||| |||||||||||| || ||||||||||||||||    
T  25499229 ttattctcttgtgatgtatcattaggttacatatgagctctatttatagagaaatacaatgactt 25499165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 32148636 - 32148564
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttg 106  Q
    ||||| ||||| ||||||||| || ||||||||||||| | |||||||||| || ||||||||||||||||||    
T  32148636 attatattattttcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 32148564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 11726471 - 11726552
Alignment:
Q  22 agagagaaaagtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||| ||||||||| |||||||||| || | | |||| |||||||||||||||||||||| || ||||||||||| ||||    
T  11726471 agagagagaagtattatattattctcttatgttgt-caataaggttacatgtgagctctatttatagagaaatacaataactt 11726552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 11726398 - 11726451
Alignment:
Q  60 attaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaa 113  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||| ||||||    
T  11726398 attaggttacatgtgacctctatttataaagaaacacaatgactttggaaacaa 11726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25493992 - 25493928
Alignment:
Q  40 ttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||||| ||  |||| ||||||| |||||||||||| || ||||||||||||||||    
T  25493992 ttattctcttgtgatgtatcattatgttacatatgagctctatttatagagaaatacaatgactt 25493928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 44655758 - 44655688
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||||  |||| || |||||||||| |||||    
T  44655758 attatattattctcttgtgatgtataattaggttacatatgagcttaatttatagagaaatacaaagactt 44655688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 42209027 - 42208982
Alignment:
Q  59 aattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||    
T  42209027 aattaggttacatatgagctctatttatagagaaatacaatgactt 42208982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 2168639 - 2168738
Alignment:
Q  22 agagagaaaagtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    |||||||| || ||||| ||||||||||||||| || ||||||| ||||| |||||||||||| || |||||||||||||||| |  | |||||||||||    
T  2168639 agagagaagaggattatattattctcttgtgatgtataattaggctacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaata 2168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 2174218 - 2174305
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || |||||||||||||||| |  | |||||||||||    
T  2174218 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaata 2174305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 13990991 - 13990904
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || |||||||||||||||| |  | |||||||||||    
T  13990991 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaata 13990904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 23338988 - 23338918
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  23338988 attatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgactt 23338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 23344535 - 23344465
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  23344535 attatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgactt 23344465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 48216336 - 48216406
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  48216336 attatattattctcttgtgatatataattaggttacatatgagctctatttatagagaaatacaatgactt 48216406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 13985419 - 13985332
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| || ||||||||||||| ||| |||||||| || |||||||||||||||| |  | |||||||||||    
T  13985419 attatattattctcttgtgatgtataattaggttacatatgatctctatttatagagaaatacaatgacttggggagcaaacacaata 13985332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 40802562 - 40802649
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacacaata 121  Q
    ||||| ||||||||||||||| || ||||| ||||||| |||||||||||| || |||||||||||||||| | || ||| |||||||    
T  40802562 attatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttgggaagcaagcacaata 40802649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 3110509 - 3110579
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||| ||||||| |||||||||||| || ||||||||||||||||    
T  3110509 attatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgactt 3110579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 3112126 - 3112196
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||| ||||||| |||||||||||| || ||||||||||||||||    
T  3112126 attatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgactt 3112196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 40800638 - 40800708
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||||||||| || || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  40800638 attatattattctcttgttatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 40800708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 13980656 - 13980726
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||||||||  || ||||||||| |||||| |||||||||||| || ||||||||||||||||    
T  13980656 attatattattctcttggtatgtacaattagattacatatgagctctatttatagagaaatacaatgactt 13980726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 9730313 - 9730380
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    ||||| |||||||||||| || || |||||| |||||| |||||||||||| || |||||||||||||    
T  9730313 attatattattctcttgtcatgtataattagattacatatgagctctatttatagagaaatacaatga 9730380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 13992089 - 13992145
Alignment:
Q  160 taataatatgacacaataactcaattgctaaatagccatctacttataatattcata 216  Q
    ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||||||||    
T  13992089 taatagtatgacccaataacccaattgctatatagacatccacttataatattcata 13992145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 34578842 - 34578887
Alignment:
Q  59 aattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||||| | |||||||||| || ||||||||||||||||    
T  34578842 aattaggttacatataagctctatttatagagaaatacaatgactt 34578887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 13980757 - 13980813
Alignment:
Q  160 taataatatgacacaataactcaattgctaaatagccatctacttataatattcata 216  Q
    ||||| |||||| ||||||| ||||| ||| |||| |||| ||||||||||||||||    
T  13980757 taatagtatgacccaataacccaattcctatatagacatccacttataatattcata 13980813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 12756162 - 12756232
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  12756162 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 12756232  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 24052034 - 24052104
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  24052034 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 24052104  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 41043638 - 41043568
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    |||||| |||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  41043638 attatgctattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 41043568  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 41049011 - 41048941
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||||||||| ||||||||| || ||||||||||||| |||||||||||| |||| ||||||||||||||    
T  41049011 attatgttattatcttgtgatgtataattaggttacatatgagctctatttataaataaatacaatgactt 41048941  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 28366981 - 28367051
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  28366981 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 28367051  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 28375721 - 28375791
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  28375721 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 28375791  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 34647940 - 34648001
Alignment:
Q  40 ttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatga 101  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||| || |||||||||||||    
T  34647940 ttattctcttgtgatgtacaattaggttacatatgagctcaatttatacagaaatacaatga 34648001  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 1536555 - 1536625
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||||||||  || |  ||||||||||||| |||||||||||| || ||||||||||||||||    
T  1536555 attatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatgactt 1536625  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 54428 - 54502
Alignment:
Q  24 agagaaaagtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaat 99  Q
    |||||||| |||||| |||||| |||||| | |||||||  ||||||||||| |||||||| || |||||||||||    
T  54428 agagaaaa-tattatattattcacttgtgttgtacaattgtgttacatgtgaactctatttatatagaaatacaat 54502  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 30963174 - 30963242
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||| |||| |||  |||||||||| || ||||||||||||||||    
T  30963174 attatattattctcttgtgatgtataattaagttatatg--agctctatttatagagaaatacaatgactt 30963242  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 15711202 - 15711132
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  15711202 attatattattctcttgtgatgtataattacgttacatatgagctctatttataaagaaatacaatgactt 15711132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 27178970 - 27179040
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  27178970 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 27179040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 27194971 - 27195041
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  27194971 attatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 27195041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 16498712 - 16498803
Alignment:
Q  22 agagagaaaagtattatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaa 113  Q
    ||||||| || |||| | ||||||||||||| | | |||||||||||||| |||||||||||| || ||| |||||||||||| ||||||||    
T  16498712 agagagagaaatattctattattctcttgtggtatgcaattaggttacatatgagctctatttatagagagatacaatgacttggaaaacaa 16498803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 17721898 - 17721815
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactttgaaaacaaacac 117  Q
    ||||| ||||||||||||||| ||||||||||||||||  ||||||||||| || ||||||| |||||||| |  |||||||||    
T  17721898 attatattattctcttgtgatgtacaattaggttacatacgagctctatttatagagaaatataatgacttggggaacaaacac 17721815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 15716783 - 15716713
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||| ||||||| |||||||||||| || ||||||||||||||||    
T  15716783 attatattattctcttgtgatgtataattacgttacatatgagctctatttatagagaaatacaatgactt 15716713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 26711477 - 26711547
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| |  ||||||||||||| |||||||||||| || ||||||||||||||||    
T  26711477 attatattattctcttgtgatgtctaattaggttacatatgagctctatttatagagaaatacaatgactt 26711547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 33498419 - 33498489
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||||||| || ||||||||||||| | ||||| |||| || ||||||||||||||||    
T  33498419 attatattattctcttgtgatgtataattaggttacatataagctccatttatagagaaatacaatgactt 33498489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 3343879 - 3343943
Alignment:
Q  40 ttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||| || || ||||||||||||| | || ||||||| || ||||||||||||||||    
T  3343879 ttattttcttgttatatataattaggttacatataagttctatttatatagaaatacaatgactt 3343943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 345671 - 345741
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||| |||| |||| || |||||||||||||||||||||||||| || ||||||||||||||||    
T  345671 attatattattttcttatgatgtataattaggttacatgtgagctctatttatagagaaatacaatgactt 345741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 350992 - 351062
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||||||| |||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  350992 attatattattctcttatgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt 351062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 11117 - 11047
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| |||||||||||  || | ||||||||||| || |||||||||||| || ||||||||||||||||    
T  11117 attatattattctcttggtatatccaattaggttatatatgagctctatttatagagaaatacaatgactt 11047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 8754 - 8698
Alignment:
Q  160 taataatatgacacaataactcaattgctaaatagccatctacttataatattcata 216  Q
    ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||||||||    
T  8754 taatagtatgacccaataacccaattgctatatagacatccacttataatattcata 8698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 39623 - 39553
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||   || ||| |||||||||||| |||||||||||| || ||||||||||||||||    
T  39623 attatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgactt 39553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 11426 - 11496
Alignment:
Q  34 attatgttattctcttgtgatttacaattaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    ||||| ||||||||||   || ||| |||||||||||| |||||||||||| || ||||||||||||||||    
T  11426 attatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgactt 11496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 27037 - 26993
Alignment:
Q  60 attaggttacatgtgagctctatttttaaagaaatacaatgactt 104  Q
    |||| ||||||| |||||||||||| || ||||||||||||||||    
T  27037 attatgttacatatgagctctatttatagagaaatacaatgactt 26993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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