View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18143_low_4 (Length: 462)

Name: NF18143_low_4
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18143_low_4
NF18143_low_4
[»] chr5 (2 HSPs)
chr5 (9-266)||(6307659-6307909)
chr5 (375-454)||(6308536-6308615)
[»] chr1 (1 HSPs)
chr1 (374-454)||(24304510-24304590)
[»] chr3 (2 HSPs)
chr3 (374-451)||(52641499-52641575)
chr3 (374-420)||(29451492-29451538)
[»] scaffold0016 (1 HSPs)
scaffold0016 (270-309)||(107776-107815)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 6307659 - 6307909
Alignment:
Q  9 gaagaatattgtgggaaaattattcaatcaataatatttgttgcttttctctattttgtgtttgactttgtctaattccactcaaccaattttatagtgg 108  Q
    |||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6307659 gaagaaaattgttggaaaactatttaatcaataatatttgttgcttttctctattttgtgtttgactttgtctaattccactaaaccaattttatagtgg 6307758  T
Q  109 atagcttgcttgaaatttgaataggatgcttcggggattaagatcagttcctattacttctccatatacnnnnnnnnnnnnnnnnnnnnnnggccatcac 208  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||    
T  6307759 atagcttgc-------ttgaataggatgcttcggggattaagatcagttcctattacttctccatatacttttatttatttatttttatctggccatcac 6307851  T
Q  209 ttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6307852 ttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgatt 6307909  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 6308536 - 6308615
Alignment:
Q  375 agctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaaggga 454  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6308536 agctctgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcgtacgattaggaaggga 6308615  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 24304590 - 24304510
Alignment:
Q  374 aagctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaaggga 454  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||| ||||||    
T  24304590 aagcttcgagtccatatccctttgcaaattttcttgtggatctttagagtttatgctagattttatatgattagaaaggga 24304510  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 52641575 - 52641499
Alignment:
Q  374 aagctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaag 451  Q
    ||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||| |||| ||||||||||||||    
T  52641575 aagctccgagtccaaattcctttgcaaattttcttgtggatc-ctagagtctatgctatattttatacgattaggaag 52641499  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 29451492 - 29451538
Alignment:
Q  374 aagctccgagtccaaatccctttgcgaattttcttgtggatctttag 420  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  29451492 aagccccgagtccaaatccctttgcgaattttcttgtggatctttag 29451538  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 107776 - 107815
Alignment:
Q  270 tttcgtggaacacctagagggagcacttttcctattctat 309  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  107776 tttcgtggaacacctagaggtagcacttttcctattctat 107815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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